Detail information of BGIOSGA016988_circ_g.4


General Information
CircRNA Name BGIOSGA016988_circ_g.4
ID in PlantcircBase osi_circ_014704
Alias Chr04:30161454_30161715(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28265101-28265362  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016988
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016988_circ_g.3 BGIOSGA016988_circ_g.5 BGIOSGA016988_circ_g.6 BGIOSGA016988_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA016988-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGGTAGGGGTGTTCTCTAAATGCAGCCGATTCAACGAGCTCATCGAGCTTCTGAAGGATATG
CAAGGCACACGACTGGACAGGAGGCTGTACCTGACCgatctggaaggagatgatgcgccgcaag
attcagcctgacaggatcagctacaccgcgatcatcaacgcgttcaaccggtcgggagaactgg
accggtgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTGGAAGGAGATGATGCGCCGCAAGATTCAGCCTGACAGGATCAGCTACACCGCGATCATC
AACGCGTTCAACCGGTCGGGAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTTCAGGGAGA
CAGGAGGAAAGGTGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAATGCAGCCG
ATTCAACGAGCTCATCGAGCTTCTGAAGGATATGCAAGGCACACGACTGGACAGGAGGCTGTAC
CTGACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021