Detail information of Os04g0583101_circ_g.4


General Information
CircRNA Name Os04g0583101_circ_g.4
ID in PlantcircBase osa_circ_024989
Alias Os04circ12096
Organism Oryza sativa
Position chr4: 29457468-29457665  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0583101
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os04t058310
1-01)
Parent gene strand +
Alternative splicing Os04g0583101_circ_g.2 Os04g0583101_circ_g.3 Os04g0583101_circ_g.5 Os04g0583101_circ_g.6
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0583000-01:1
Os04t0583000-01:1
Os04t0583101-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCTAAATGCAGCCGATTCAACGAGCTCATCGAGCTTCTGAAGGATATGCAAGGCACACGAC
TGGACAGGAGGCTGTACCTGACCGTGTTGAGGAGCcggtcaggagaactggaccggtgcatgga
tttgtaccaggagttcagggagacaggaggaaaggtggacacggccctggctgggctcatggta
ggggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTCAGGAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTTCAGGGAGACAGGAGGAAAGG
TGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAATGCAGCCGATTCAACGAGCT
CATCGAGCTTCTGAAGGATATGCAAGGCACACGACTGGACAGGAGGCTGTACCTGACCGTGTTG
AGGAGC
Conservation Information
Conserved circRNAs osi_circ_005682* osi_circ_005683
PMCS 0.486175337
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015