Detail information of Os04g0583101_circ_g.5


General Information
CircRNA Name Os04g0583101_circ_g.5
ID in PlantcircBase osa_circ_024990
Alias Os04circ12072
Organism Oryza sativa
Position chr4: 29457475-29457655  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0583101
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os04t058310
1-01)
Parent gene strand +
Alternative splicing Os04g0583101_circ_g.2 Os04g0583101_circ_g.3 Os04g0583101_circ_g.4 Os04g0583101_circ_g.6
Support reads 2
Tissues panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0583000-01:1
Os04t0583000-01:1
Os04t0583101-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTCTAAATGCAGCCGATTCAACGAGCTCATCGAGCTTCTGAAGGATATGCAAGGCACACGA
CTGGACAGGAGGCTGTACCTGACCGTgagaactggaccggtgcatggatttgtaccaggagttc
agggagacaggaggaaaggtggacacggccctggctgggctcatggtaggggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTTCAGGGAGACAGGAGGAAAGGTGGACAC
GGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAATGCAGCCGATTCAACGAGCTCATCGAG
CTTCTGAAGGATATGCAAGGCACACGACTGGACAGGAGGCTGTACCTGACCGT
Conservation Information
Conserved circRNAs osi_circ_005682 osi_circ_005683*
PMCS 0.393406354
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015