Detail information of POPTR_0010s18980_circ_ag.1


General Information
CircRNA Name POPTR_0010s18980_circ_ag.1
ID in PlantcircBase pop_circ_002825
Alias Chr10:18026035-18030861
Organism Populus trichocarpa
Position chr10: 17047543-17052363  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0010s18980_circ_igg.1 POPTR_0010s18980_circ_igg.2 POPTR_0010s18980_circ_ag.2 POPTR_0010s18980_circ_ag.3 POPTR_0010s18980_circ_ag.4 POPTR_0010s18980_circ_ag.5 POPTR_0010s18980_circ_ag.6
Support reads 2,2,2,2,3,5
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGTATTTCGTTGGGGATCCGTGCTTGCTGGCTGTGATGTTATAGCCGTAAGGAGCTGCTTA
GAGCTAGAGGCTGATTTCATAAGACTTGTGGAAGACccttcactgtaagcctgtaatcccagta
ggcctactgccaccacctgctcagtgtagcgagggcggggtggatgaaaaatgggttacgatca
gtgagtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACTGTAAGCCTGTAATCCCAGTAGGCCTACTGCCACCACCTGCTCAGTGTAGCGAGGGC
GGGGTGGATGAAAAATGGGTTACGATCAGTGAGTGGCTAGACAAGCAAACCCAAGGATCTGTGG
TTTACATAGCGTTCGGAAGCGAGTTAACAATAAATCAAGATGAAATAACTGAATTGGCTCTGGG
GTTAGAGTTATCGGGTCTGCCGTTCTTTTGGGCTTTGAGGAACCAGGATGACTCGGTCAGGTTA
CCAGATGGATTTGATGAACGAGTAAAAGGACGTGGAGTGGTGTGGACGAGCTGGGCACCACAAC
TAAGGATTATGGCTCATGAATCGGTTGGGGGTTTTTTGACTCACTGCGGTTATAGCTCAGTTAT
AGAGGCACTCTCCTTTGGACTTGCTTTGATCATGTTGCCTTTCGCTATAGACCAAGGATTAATC
GCAAGGGTTTTTGAAGGGAAGAAGGTTGGGATAGAAGTGCCGAGAGATGAGCAGGACGGGTCGT
TTACGAGGAACTCGGTAGCTGAGTCACTCAGGTTGGTTATTGTTGACAGGGAAGGATCCGCCTA
TAGAGAAAATGCCAAGCAGCAGATGGTAACATTATTTGGTGATAAGAGTATCAGCGATCGATGC
ATGGACCAATTTGTTGCCTTCCTACGAAGTCATAGAAAATTGCCAGCAGTGATTAACAATGACC
TGCCCACGCACTCGCCAAACTGACACGTGTCAATGCTTATGTGTCGTGTCATCTGGTTCTTCAC
TAGGTTTTTTTAAAAAGAGTCCGGAGGTTTAGACTCTAGAGTGCCTTTTTACTGTGTTTTTTTG
TTTGTTTGTCTGTTTATGTAGTGTATAAATAGACCATTGAGTCGCTTCCTGAAACTAAAATTTG
TTTTCGAGAAATTTATGTATTATATTATATCTAAATATTTACTTTATTAATTATTAACAAAAAA
ACTGGAACTTCAAAAAACACAAAGGTACTACAAAATTGAAAGCCGTGATTGTCGGCAGGCATTT
GCGAAGAGAGGGGCCATCAGCCATGGCCCGTAGGAAGGAGGACTGTGGCTAAGATTCCTTTAGG
TTTTTTACCTGTCTCCCTCACTAATATTTTACTTTCTTCTGAAAAAAGGAATTGCACATTAATC
TCATATCTAATTTCCAGCAAATTCATGCTAATTAAAAATCATATTTTCATATTGAAACATTTTA
ACACAGAAAGATCCACCGACATTTGAAAATTTCCCTTTCTGTTTATTACACAACTTTCTCTGGA
AAATAAATAGTCAGGTTCACAGAAAGCTTGGGGAAATTTCTCACCGATTAGTCACTGATAGAAA
GCCTAAACACGTGTTCTGCAATGATCTGCGCAGATCCGTTAATCTCCGGTGGGCGGTCATTCAC
GAGGAAATTTAATTACGAGCGATGGCATTATTGGCATGCCCTACTCAATTATTTTTTGAGAAGT
GACATCTTAACTCCCTATGCTCCAAAGGAATACCTACCTACAAGATCCCAAGCCAAGAGAAAAT
GGAACGAAGATGTCCACATCAAATATATATATATAAAGAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAACGAAGATGTGAAATGCAGGAGTCCAGATCAAATATATATATATATATATATATATAT
ATATATATATATATATATATAAGATGGAGCCACGAAAAGCCACGTTAGGAAGGAAAATAAAACA
AATCAGGAGTCAAGATCGAAGCCCACACTTGAGAGAAGATAAGATTATAATTGAGCTGCTGGCC
TGAGGCCTGTGGGTGTGCATGCACCAGAGACAGTTGGATAGGAGACAGACAGAGATCAGACATC
TTGGTTTTGCATTAGGTCCCCATGTCAGTAAATTTCAAACAATTTAAGACAGAGACAGAGAATT
TATTAAATTATTTTTTTTAATAATTTAAGACCATATAATTTTAAGATTCAATAAATTTAATTTC
CTTACTTTTCTCTGTGTCCGTCTCTAATTGTGAGCCAAAGCTGTCGCAAATCATCCATTTTGGA
TAATAAATACAGTGTGCCACACATTAAGCCCTTAACTCAAAAAACCATGGGTACAAGATTATAA
CAGACCCACAGAGAGAAAAGCAAAAAATAAAATTAAAGCTGAGATTAATTCTCAAAAACATATA
TGATGAAGCATGAAATTGAGATTTGTTTTTTTAAAAAAATCAAAACTAATCTATGTTAACCATT
AAAACTTGTAACCTTAATCAAGAGGCCAAAACCGACCATATAGAAGACAGATCTTGAAAACTAC
AAAGCAAAATTCTTAATAAAAAAAATATGTTTAGAGATGAAATTAAAAAAATATTTAAAAAAAA
CAATGAAAAAAAATTAAAGTAAACTCGAGATCAAGTTAACCCCACGACAAGGAAAGTGAAAAAA
AAAAGCATGAAGACCAATATAAAAAAAAATTTGAAGGATAAAATTGAAAATAAATCAAATTTAT
AAACGAATCTAGAAAACAAATATCAACCCATATTAATTTTTGAAACCTGTGACTTGGCCATAAG
ACTGTAGCTAACCTTATAGAAGTGAAAAAACAATGAAAAAAAATTATCAACAAAAAAAATATCA
AGGAATTAAATTGGAACAAAAATACAATAAAAAAGCATTCTAAGCAAAACAATACAATAATAAA
AAATAGGAACCAATCTCGATATAAAAATAAATTTAAATCAAATACTTAGAGATACAATTAAAAA
CAAAGTTTAATTAGTAAAAAAGCAAAAAAAATCAATACATTAAAGACCGGGTTTGATATGAATA
TCAAATTAAAATAATGACAAAGATAAAAATAAAAATAAAAATTAATTAATATAAGATAAAAAAA
CAAAAAAACGTAATAATAAAAAAATTTGATTCAAAGGATATCAAAGTTGTTTTACTTTGTATAA
TGTAAAAAGACAAATACATCCCATTAATGTGTTAATGCCCAATAGACCCTTATTAAAAGACCAA
AATAGTCTTTAGGTATTTGGTTTGCTTTTAGAAAGATAAAACAGAAATGCTGGTGTATTTATTT
TTTCAGTTAAAAAATGCTTTAAATTTAATTATATATATGTTTTTAGATTGTTTTGATGATAAAA
ATAACTTTTAAAAAATAATAAAAATCTATATTAAAAACTTTAAAAAACATCTATTAATACAATT
TCAAAGAGTACGAGCCAGCTTCCCCATCAAATACTCGTTGTTATACATAGACAGCAAACAACAT
ACAGAATTCACTTGCGGCTCTGTACTAGAGACAGCATCAGTCAATACCACCAGATCTGGAAGAA
TTTTTCATTCGCAGCCAAAACCTACCAATACTAATATAACTCGTAGTCAATAGCATCTTGCAAC
GACGATCCCTCCGTATCTTGTGATCCTGCCCTGCAAAGAAAAGGGGCAGTGATAAAATATAAAT
GTAAAATACAATACACACACACACGCACCAATCCATAATGATCATCTGCAATGCCTTGCACCGA
CCCGTTTGGTTGCATAACTAACCGTTGTTGCAAGTAAGGTACGCTCGTTGACGAACGGCGACGA
CGTTTTATCTAAAATATACATGAAATATATTTATTTATTTAATCTTTCCTGTTTTTCTGAGAAT
GAAATGAATTGGCTTGATTATTTACACTGCAGATGAATGAACCCTTTGTTTTCTGCAGAAGAGA
AAAGGCCGAAGGGGGCATTTTGAATTTGGCACCCCTTAGTTTTGGGCTTCTGGCGGTCCCATGT
CCAGACCATCCTTGGGCCTTTTGTTTTTGGGCTACACGAAGGGAAGTTGAGCGCTTATGCTGAA
ATCTTGTGCCCTTGTCTTCAGGGCTTCAAGCCGGCCATCCCTATGGCTAGGAGTCAGGAACTTT
AATTATCGCGCCTAAATTTTAATTTGTTTTTTTTTAAGTTATAAAACAGATTGTGAGAGTTTTT
TAGAAAAATAAAATAATCTTTAAATAAAACGTGAAGCATTATCTTTATCTGATTTAATAATAAA
TAAACGAATTTAATAGTATGGCTCATTTTTCATTAATTTATAATGGTTTAGATTCTTTTTCATA
TCTATGTAATAACCAGTTTTCTCATATGTATTCTTAAATTAGAGAATTTCGAAGAGCTTTTATT
TCTTATCCATATAATAGAATGGAGTGGTTGTTGTTATCGTCCTCGTCGTCATGATGGGAGGATA
GTAATATATCAGGTATTAATGAAGTCATCGATTTTCATGTAAAAAAATTTACAATAATAATTCA
ATTTCGAAATAAAAAACTCTCATTCGCTAGCTATATATATATATACACATGGAATACAGGATAA
GAAGCTAAAGCCACAAAAGCATTTAGATCAGGAAGTATCAATGGATGAACCTCACGAGCTCCAC
ATAGCCATGTTCCCATGGCTTGCTTTCGGTCATATAATCCCATATCTAGAGATCGCCAAGCTAA
CATCCAACGTTTACCAACTATACCTCCAAATTTAACACCGCGAATCAATTTTTAATGCATGGAC
CATATCCTTCTCTGGACCATCATCCTCAGCTATGCTCAACGGCGACGATCCAAGGACCGAACCG
CAACACCTCACGGTCCCTCCAAAGTGGGTCACATTTCCCTCTAAAGTGGCATTTCGCATCCATG
AAGCTAAGCGGTTTATGGATCAAATTGAAGCGAACAGTTCAGGTGTCACTGATGTATTTCGTTG
GGGATCCGTGCTTGCTGGCTGTGATGTTATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGAT
TTCATAAGACTTGTGGAAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.093364587
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020