Detail information of Os11g0703900_circ_g.8


General Information
CircRNA Name Os11g0703900_circ_g.8
ID in PlantcircBase osa_circ_010095
Alias Os_ciR3668
Organism Oryza sativa
Position chr11: 28805417-28805536  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.2 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTGCGACATTGATGGCTCCTGTATGAGCCTCCAATTACTATATAGCCGTTTACATGTTtcat
tgtctacttttgtgactatgtgtctcgaaatatggcatataataagggggaacgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCATTGTCTACTTTTGTGACTATGTGTCTCGAAATATGGCATATAATAAGGGGGAACGGATCTT
GCGACATTGATGGCTCCTGTATGAGCCTCCAATTACTATATAGCCGTTTACATGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.200555556
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015