Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025044_circ_g.6 |
ID in PlantcircBase | zma_circ_010269 |
Alias | zma_circ_0000004 |
Organism | Zea mays |
Position | chr10: 101423601-101436708 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025044 |
Parent gene annotation |
Vacuolar protein sorting-associated protein 54 chloroplastic |
Parent gene strand | + |
Alternative splicing | Zm00001d025044_circ_g.2 Zm00001d025044_circ_g.3 Zm00001d025044_circ_g.4 Zm00001d025044_circ_g.5 Zm00001d025044_circ_g.7 Zm00001d025044_circ_g.8 Zm00001d025044_circ_g.9 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025044_T025:6 Zm00001d025044_T040:6 Zm00001d025044_T015:6 Zm00001d025044_T017:5 Zm00001d025044_T008:6 Zm00001d025044_T035:6 Zm00001d025044_T029:6 Zm00001d025044_T038:6 Zm00001d025044_T002:6 Zm00001d025044_T027:6 Zm00001d025044_T037:6 Zm00001d025044_T021:6 Zm00001d025044_T019:6 Zm00001d025044_T023:6 Zm00001d025044_T034:6 Zm00001d025044_T010:6 Zm00001d025044_T003:6 Zm00001d025044_T005:6 Zm00001d025044_T013:6 Zm00001d025044_T030:6 Zm00001d025044_T004:6 Zm00001d025044_T039:6 Zm00001d025044_T012:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.126597922 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
101423602-101423601(+) 101436302-101423623(+) |
Potential amino acid sequence |
MTKIKAVLDQETWVAVDVPEEFQAIVLSLSSTYSSVNGMEMPSTDDNSKFSDHQPTSQELTYSA ENNADNGKVTSGTGENQVESTSQSANNVAGNLKSTLQTIVHGGVGYHMVNCGLILLKMLSEYVD ISKCLPSLSLEVVQRVVEILKLFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQIISFIHSLI PDIRRVLFLKIPEARKQLLMSELDRVAQDYKIHRDEIHSKLVQIMRERLLANLRKLPQIVEGWN APQDNDVQPSQFAKAVTKEVTYLHRILSQTLLEVEVQTIFR*(+) MPHRIMMCSRVNLLKLLQRKLPICTVSFLKHCLRLRCKQYSDDKNQGSS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |