Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025044_circ_g.4 |
ID in PlantcircBase | zma_circ_010267 |
Alias | zma_circ_0000002 |
Organism | Zea mays |
Position | chr10: 101422294-101424367 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025044 |
Parent gene annotation |
Vacuolar protein sorting-associated protein 54 chloroplastic |
Parent gene strand | + |
Alternative splicing | Zm00001d025044_circ_g.2 Zm00001d025044_circ_g.3 Zm00001d025044_circ_g.5 Zm00001d025044_circ_g.6 Zm00001d025044_circ_g.7 Zm00001d025044_circ_g.8 Zm00001d025044_circ_g.9 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025044_T003:4 Zm00001d025044_T017:4 Zm00001d025044_T037:4 Zm00001d025044_T040:2 Zm00001d025044_T012:4 Zm00001d025044_T038:4 Zm00001d025044_T002:4 Zm00001d025044_T035:4 Zm00001d025044_T004:4 Zm00001d025044_T029:4 Zm00001d025044_T005:4 Zm00001d025044_T015:4 Zm00001d025044_T027:4 Zm00001d025044_T021:4 Zm00001d025044_T008:4 Zm00001d025044_T010:4 Zm00001d025044_T030:4 Zm00001d025044_T039:4 Zm00001d025044_T013:4 Zm00001d025044_T019:4 Zm00001d025044_T034:4 Zm00001d025044_T023:4 Zm00001d025044_T025:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.165288896 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
101423602-101422296(+) 101422353-101424329(-) 101422427-101424277(-) |
Potential amino acid sequence |
MTKIKAVLDQETWVAVDVPEEFQAIVLSLSSTYSSVNGMEMPSTDDNSKFSDHQPTSQELTYSA ENNADNGKVTSGTGENQVESTSQSANNVAGNLKSTLQTIVHGGVGYHMVNCGLILLKMLSEYVD ISKCLPSLSLEVVQRVVEILKLFNTRTCQLVLGAGAMQG*(+) MGSITSRENCFSVFSQDISPAWPLHREQVGKS*(-) MIKNSSSLNLGCNPARTPSSLAHRPWAASQAAKTASVFSLKTSALHGPCTENKLASPSVEKLQY FHNTLDHLQR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |