Detail information of Os11g0703900_circ_g.6


General Information
CircRNA Name Os11g0703900_circ_g.6
ID in PlantcircBase osa_circ_010093
Alias NA
Organism Oryza sativa
Position chr11: 28804541-28806433  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.2 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTGTCATCAAAGTCTTGGTTCCTTTGTATTTCTAGTTCAGATTCATTTTTCTTCAGCTTTT
GAAACATAAACTCAGTATATTTTTACTGTAATTGCTgtaactacttattccctgctcctcagtc
ctctctctttctctctctccccccttagatctcatctctaaggtcttcgtcgtcgtcgtatgct
agatctac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1893
Transcript exons: 28804541-28806433
GTAACTACTTATTCCCTGCTCCTCAGTCCTCTCTCTTTCTCTCTCTCCCCCCTTAGATCTCATC
TCTAAGGTCTTCGTCGTCGTCGTATGCTAGATCTACTCTTGCCCAGCTCGTTCAGATCTGTTAG
ATTTGTGTGGGATGCTCTAATTAATTACTACCAACTTAGTAGATCTGGAACTCTTTTGACTTGC
AGATCTTGCTCCACTCCTGTTGCATTTTGAATCTGTGTTGATGTGATTTAAGTTGTTGGCAGTG
CTTTTTGCATACTATTTGAATTTGTGGATGGTTAGCAGTCAGTACACTAGGATTTATTACTGGA
TCTGGACAGATATGCTCGTTTCAATCGGCTCGATTTGCTATGTTGATAGCTAACATGTTGTGCT
TGTCCTACTGCCCTGGCGCAAATTTGATCCATGCATTCTTTTCGTTAAATGATTTGTCAAGTAG
TAATGCTTGTTTGAAAATGATATTATTATTATTATTATTATTTTAAATAAATATAGCCTGAAAC
ATTCTTAGTTTCGAGGAGAAGTGATGATGTCTTATCCATACCACATGTCTGCATCTCATATGAT
GATTAATCTACATCATGCACTACCATCTGATCTCCTCTAGCTCATACAGCTTTTAACAAGTTAG
GCGATAGATGTTTGCTACAAACAGTCAACTGGATTTGCTTTCTTGAAAGAAAAAAAATGAACCG
TGTAGTTTGCAACCTGTGATGTAAATTAACCCATTTACTGAACTACATTGATTATTTCAGTAAA
ATCACCATCTTTCGGCTGAGGTTGCATGCTTAGTTATTATATTTTTACCAATGATGATTTTGTT
ATGTAGCCAGATACTGTACTTTCTTATGCCATTTGGTATCTGACTCATTGTCTACTTTTGTGAC
TATGTGTCTCGAAATATGGCATATAATAAGGGGGAACGGATCTTGCGACATTGATGGCTCCTGT
ATGAGCCTCCAATTACTATATAGCCGTTTACATGTTCTTATCATGTTACTTTTCCAAATTAGTG
CTGCACATCTTGTCTGTTTGCAAGTTTGGGTTCATTCATATTGCTGTGGGCATTTTAATACATC
TTAACTATAATGTAAATTTCTTGTACATCGCTAAAATTTTCTGCCTTGATTGAGTAGACTCTTA
GATGACATCTATCTTACCTTATGCACTTGATTCGTATTTCTGTTACAACATTTTGATTACTTGA
TGTAGTTCACACAAGCATGACACATCTCTTTGAAAAAAAGATTTCATTTTTTAAAGCAAGCCTA
ATGCTTTAGGGTGGGAGAAGTGATGATACTTAATCCATACAACATTTCTGCATCTCAGATGATG
ATCAATCTACATCATGCACTACCATCTGATCTCCCCATCATACAATTTTTTATTTTGTTTTGTT
GGATTATATAACTTTAACATTTGATAAAGTGCCAACAGATTTTTATACACAATTTCTTATAGAT
ATTACCATGACAGCTTGCAGCCTGTGATGCAAAAGTACCCATTAAACTGAATTACACTGATTAT
TCCAAACAAATCACCATCTTTCGGCTGAGGTTGCTTGCTTGTTTAAAATTATGAATGCTTCTTG
CACAACCATTTAGGACTTTCGGTAGTTTGTAATGCCATTTGGTATCTGACACATGGTCTGCGCT
TGTGACTATTTGTCTTGAAATATGGCATAAAACAAGGGGGAACGGATCTTGCGACATTGGTGGT
TCCTCTATGATCCTCCAATTACTATATAGCTGTTTACAATTTGTTAAGTTAGGAGCATACCTTT
TGCTTTGTCATCAAAGTCTTGGTTCCTTTGTATTTCTAGTTCAGATTCATTTTTCTTCAGCTTT
TGAAACATAAACTCAGTATATTTTTACTGTAATTGCT

Genomic sequence GTAACTACTTATTCCCTGCTCCTCAGTCCTCTCTCTTTCTCTCTCTCCCCCCTTAGATCTCATC
TCTAAGGTCTTCGTCGTCGTCGTATGCTAGATCTACTCTTGCCCAGCTCGTTCAGATCTGTTAG
ATTTGTGTGGGATGCTCTAATTAATTACTACCAACTTAGTAGATCTGGAACTCTTTTGACTTGC
AGATCTTGCTCCACTCCTGTTGCATTTTGAATCTGTGTTGATGTGATTTAAGTTGTTGGCAGTG
CTTTTTGCATACTATTTGAATTTGTGGATGGTTAGCAGTCAGTACACTAGGATTTATTACTGGA
TCTGGACAGATATGCTCGTTTCAATCGGCTCGATTTGCTATGTTGATAGCTAACATGTTGTGCT
TGTCCTACTGCCCTGGCGCAAATTTGATCCATGCATTCTTTTCGTTAAATGATTTGTCAAGTAG
TAATGCTTGTTTGAAAATGATATTATTATTATTATTATTATTTTAAATAAATATAGCCTGAAAC
ATTCTTAGTTTCGAGGAGAAGTGATGATGTCTTATCCATACCACATGTCTGCATCTCATATGAT
GATTAATCTACATCATGCACTACCATCTGATCTCCTCTAGCTCATACAGCTTTTAACAAGTTAG
GCGATAGATGTTTGCTACAAACAGTCAACTGGATTTGCTTTCTTGAAAGAAAAAAAATGAACCG
TGTAGTTTGCAACCTGTGATGTAAATTAACCCATTTACTGAACTACATTGATTATTTCAGTAAA
ATCACCATCTTTCGGCTGAGGTTGCATGCTTAGTTATTATATTTTTACCAATGATGATTTTGTT
ATGTAGCCAGATACTGTACTTTCTTATGCCATTTGGTATCTGACTCATTGTCTACTTTTGTGAC
TATGTGTCTCGAAATATGGCATATAATAAGGGGGAACGGATCTTGCGACATTGATGGCTCCTGT
ATGAGCCTCCAATTACTATATAGCCGTTTACATGTTCTTATCATGTTACTTTTCCAAATTAGTG
CTGCACATCTTGTCTGTTTGCAAGTTTGGGTTCATTCATATTGCTGTGGGCATTTTAATACATC
TTAACTATAATGTAAATTTCTTGTACATCGCTAAAATTTTCTGCCTTGATTGAGTAGACTCTTA
GATGACATCTATCTTACCTTATGCACTTGATTCGTATTTCTGTTACAACATTTTGATTACTTGA
TGTAGTTCACACAAGCATGACACATCTCTTTGAAAAAAAGATTTCATTTTTTAAAGCAAGCCTA
ATGCTTTAGGGTGGGAGAAGTGATGATACTTAATCCATACAACATTTCTGCATCTCAGATGATG
ATCAATCTACATCATGCACTACCATCTGATCTCCCCATCATACAATTTTTTATTTTGTTTTGTT
GGATTATATAACTTTAACATTTGATAAAGTGCCAACAGATTTTTATACACAATTTCTTATAGAT
ATTACCATGACAGCTTGCAGCCTGTGATGCAAAAGTACCCATTAAACTGAATTACACTGATTAT
TCCAAACAAATCACCATCTTTCGGCTGAGGTTGCTTGCTTGTTTAAAATTATGAATGCTTCTTG
CACAACCATTTAGGACTTTCGGTAGTTTGTAATGCCATTTGGTATCTGACACATGGTCTGCGCT
TGTGACTATTTGTCTTGAAATATGGCATAAAACAAGGGGGAACGGATCTTGCGACATTGGTGGT
TCCTCTATGATCCTCCAATTACTATATAGCTGTTTACAATTTGTTAAGTTAGGAGCATACCTTT
TGCTTTGTCATCAAAGTCTTGGTTCCTTTGTATTTCTAGTTCAGATTCATTTTTCTTCAGCTTT
TGAAACATAAACTCAGTATATTTTTACTGTAATTGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.230613977
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017