Detail information of Os12g0264500_circ_g.3


General Information
CircRNA Name Os12g0264500_circ_g.3
ID in PlantcircBase osa_circ_011054
Alias NA
Organism Oryza sativa
Position chr12: 9351319-9353587  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os12g0264500
Parent gene annotation Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coe
nzyme A hydrolase). (Os12t0264500-01);Similar to CHY1. (Os12t026
4500-02);Conserved hypothetical protein. (Os12t0264500-03);Simil
ar to cDNA clone:J013000A22, full insert sequence. (Os12t0264500
-04)
Parent gene strand +
Alternative splicing Os12g0264500_circ_igg.1 Os12g0264500_circ_igg.2 Os12g0264500_circ_g.1 Os12g0264500_circ_g.2 Os12g0264500_circ_g.4 Os12g0264500_circ_g.5 Os12g0264500_circ_g.6 Os12g0264500_circ_g.7 Os12g0264500_circ_g.8 Os12g0264500_circ_g.9 Os12g0264500_circ_g.10 Os12g0264500_circ_g.11 Os12g0264500_circ_g.12 Os12g0264500_circ_g.13 Os12g0264500_circ_g.14 Os12g0264500_circ_g.15 Os12g0264500_circ_g.16 Os12g0264500_circ_g.17 Os12g0264500_circ_g.18 Os12g0264500_circ_g.19 Os12g0264500_circ_g.20 Os12g0264500_circ_g.21 Os12g0264500_circ_g.22 Os12g0264500_circ_g.23 Os12g0264500_circ_g.24 Os12g0264500_circ_g.25 Os12g0264500_circ_g.26 Os12g0264500_circ_g.27
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered Os12t0264500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTGTATAAATCGCCAGCCCGTAGGCACGTGACATCTATCGAAAAAGAGAGGAAAAATACTAC
CCGTCCTCTGCTTCTCTCTTTCTTTCTCTTGCTGTGgttacttcttattagggatgaaaacgga
tcgaatacggacggaaactagctctaccatattcattttcatatttttttcggaatcggaatcg
gaaacccc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2269
Transcript exons: 9351319-9353587
GTTACTTCTTATTAGGGATGAAAACGGATCGAATACGGACGGAAACTAGCTCTACCATATTCAT
TTTCATATTTTTTTCGGAATCGGAATCGGAAACCCCGGATACGAAAACAGAATCGAATATTGTC
GAATACAGATAGGAGCGAATACAAAATGGAACGAATACGGTGACGAATATTAATCGGAACAAAA
ACCCCTCAAACTAAGCATCACAAATCAACGAATATTTCCAAATTTTAGTGTTAATAATTTTGCT
ATATCCAATTTTGTGGTTGAGGGTGACGGCATCTGCAAAAATCGACCTTATTTTCTATGCGGCT
CCTTAAGACTAGTTTATCGCACTCATATGAACTCCAAATTGGATGATTCTTTTTTCTAAATGTT
TGTAAAATCATGCTCTATTGTGTTAGTGTGTTCTTACTGCTATTATTTTGGCCATATTTTTCTT
GTGACTTTGTTTTATCAATTAAAATTTTGAATTTCAAAAAAATAACAACTTCAAATAATATTTT
GAAGCGGTAAATAATTCCAGCTGAAAAAGTCATGAACATAAAAGTTGTAGAACTCATCAAGAGC
TACAACTTTTATTTTGATCATTTCTTCATCCGACAAAGCAGTAGTAACATTGTTCACAAAATTT
ACATATCTCTCTTATAACTTATGAAACTATATGTGAGATATGTAAATTTTGTAAACAATGTTAC
TATCGCTTTGTTGGATGAAGAAATGACCAAAATAAAAGTTATAGATCTTGATGAGTTATACAAC
TTTGTTATTGATGACTTTTTTAGTTGAAATCATTTAGTATTTGAAAATGTTGTTTGAAGGTGTC
ATATTTTGAAATTCAAATTCAAACTGTTTAACAAAGTCACATAGAAAAATGACACAAACAAAAG
TTGTAGATCTTGATGCGTTTTACAACTTTGTTGTTGACAGTTTTTTTCATTTGAAAACATTTAA
TACCCAAAAAATTATTTCAATTTCATATATTTTAAAATTCAAATTTTATATAGTTCAATAAAAC
TCGGATGGAAAAATTACCAAAATAAAAATGGTAGAAGTCAATGAGTTCTACAACTTTGTTTTTT
ACAACTTTTTCATATGAGTTCATTTACTACGATAAAATTCGATTCAAAGTTTTTCATTGGATTA
AAGAAGGTGGGTCCCAACTGTAAGGGTCCTCCTCTTCCTTTTCTTTCCCTTCTTCTCTTCCTCT
TTCTCTCTCTTTCTTATCTCCTCTGCTCTCTTCTCCCCTTTCTTCGCGATTCTCCACGCCAGAG
GGGGAGGGGCGGGCATGGCGCGCGGCGGGGTGGCGGCCTAGCACGGCGGGGTGCCGGCCTGGCG
CGGCGGGCGAGACGGCCGGCGCCCTCCCCCTCCCAAATCCAGCGGCGGCGGGCTGGGCAGGGGC
CGGTCGTGGCCGGGAGCGGCGCGGCGCGGCGTGAGCGGCGTGGCAGCGGCTTGGGATCTCCGGC
GGCTCCGACAACAACGATGGGAGGGGCAGATCTGGTGGCGGCGACGGCGACGACGAGGACAAGG
ACGGCTGTGGAGGCTTCGAGCGACGTCGATAGCGACAACGAGGATGGCGTCGCCGGCGGTGAGC
TAGGGTTTCGGCATTTTCGAGATTTTTATTTTTTTTTTCGATTTTTGATGTGGCTGATTTGGAT
TTGGCTGTTGATTTTGATTCGGATATCCGGAAAAAAAGTCCGGATAGTTTCCGACCGAATCCGA
GTTCCGACGGATACCATCGCTACTGTATTCGAATCCGTTTCCGAGAAAAACTATCCGAATTCGT
ATCCGAATCCGAAAATATCCGAAAAAAATCCGACCGAAGTGAATTCGGAAATTATCCGTACCAC
TTTCATCCCGCAATGCTGCCGTGGTCCAGAACTTAGCGTGTTGGGGTTCTCTTCCTGCTGCTTT
GGCCACCTGGGAGGATGCTGACGTTGTTCGCACCAGATTTCCGGACGCTGTCCCTTGGGGACAA
GCTCCAATTCCAGGGGGGGCAACTGTTATGCCTATGCCGGATGAGCTACTGGCAACGACCGAAG
GAGGTGTGTCGAACTGAAGACGTACTGCGAAAAGACGTTTTCGAGTGGCTATAGCATATTGAGT
CTATGTACTGATTTCTGACACTGGCTTGTGGGGCTAACGGTTGTTGAGTCGGGTGTGTGGTGTA
TAAATCGCCAGCCCGTAGGCACGTGACATCTATCGAAAAAGAGAGGAAAAATACTACCCGTCCT
CTGCTTCTCTCTTTCTTTCTCTTGCTGTG

Genomic sequence GTTACTTCTTATTAGGGATGAAAACGGATCGAATACGGACGGAAACTAGCTCTACCATATTCAT
TTTCATATTTTTTTCGGAATCGGAATCGGAAACCCCGGATACGAAAACAGAATCGAATATTGTC
GAATACAGATAGGAGCGAATACAAAATGGAACGAATACGGTGACGAATATTAATCGGAACAAAA
ACCCCTCAAACTAAGCATCACAAATCAACGAATATTTCCAAATTTTAGTGTTAATAATTTTGCT
ATATCCAATTTTGTGGTTGAGGGTGACGGCATCTGCAAAAATCGACCTTATTTTCTATGCGGCT
CCTTAAGACTAGTTTATCGCACTCATATGAACTCCAAATTGGATGATTCTTTTTTCTAAATGTT
TGTAAAATCATGCTCTATTGTGTTAGTGTGTTCTTACTGCTATTATTTTGGCCATATTTTTCTT
GTGACTTTGTTTTATCAATTAAAATTTTGAATTTCAAAAAAATAACAACTTCAAATAATATTTT
GAAGCGGTAAATAATTCCAGCTGAAAAAGTCATGAACATAAAAGTTGTAGAACTCATCAAGAGC
TACAACTTTTATTTTGATCATTTCTTCATCCGACAAAGCAGTAGTAACATTGTTCACAAAATTT
ACATATCTCTCTTATAACTTATGAAACTATATGTGAGATATGTAAATTTTGTAAACAATGTTAC
TATCGCTTTGTTGGATGAAGAAATGACCAAAATAAAAGTTATAGATCTTGATGAGTTATACAAC
TTTGTTATTGATGACTTTTTTAGTTGAAATCATTTAGTATTTGAAAATGTTGTTTGAAGGTGTC
ATATTTTGAAATTCAAATTCAAACTGTTTAACAAAGTCACATAGAAAAATGACACAAACAAAAG
TTGTAGATCTTGATGCGTTTTACAACTTTGTTGTTGACAGTTTTTTTCATTTGAAAACATTTAA
TACCCAAAAAATTATTTCAATTTCATATATTTTAAAATTCAAATTTTATATAGTTCAATAAAAC
TCGGATGGAAAAATTACCAAAATAAAAATGGTAGAAGTCAATGAGTTCTACAACTTTGTTTTTT
ACAACTTTTTCATATGAGTTCATTTACTACGATAAAATTCGATTCAAAGTTTTTCATTGGATTA
AAGAAGGTGGGTCCCAACTGTAAGGGTCCTCCTCTTCCTTTTCTTTCCCTTCTTCTCTTCCTCT
TTCTCTCTCTTTCTTATCTCCTCTGCTCTCTTCTCCCCTTTCTTCGCGATTCTCCACGCCAGAG
GGGGAGGGGCGGGCATGGCGCGCGGCGGGGTGGCGGCCTAGCACGGCGGGGTGCCGGCCTGGCG
CGGCGGGCGAGACGGCCGGCGCCCTCCCCCTCCCAAATCCAGCGGCGGCGGGCTGGGCAGGGGC
CGGTCGTGGCCGGGAGCGGCGCGGCGCGGCGTGAGCGGCGTGGCAGCGGCTTGGGATCTCCGGC
GGCTCCGACAACAACGATGGGAGGGGCAGATCTGGTGGCGGCGACGGCGACGACGAGGACAAGG
ACGGCTGTGGAGGCTTCGAGCGACGTCGATAGCGACAACGAGGATGGCGTCGCCGGCGGTGAGC
TAGGGTTTCGGCATTTTCGAGATTTTTATTTTTTTTTTCGATTTTTGATGTGGCTGATTTGGAT
TTGGCTGTTGATTTTGATTCGGATATCCGGAAAAAAAGTCCGGATAGTTTCCGACCGAATCCGA
GTTCCGACGGATACCATCGCTACTGTATTCGAATCCGTTTCCGAGAAAAACTATCCGAATTCGT
ATCCGAATCCGAAAATATCCGAAAAAAATCCGACCGAAGTGAATTCGGAAATTATCCGTACCAC
TTTCATCCCGCAATGCTGCCGTGGTCCAGAACTTAGCGTGTTGGGGTTCTCTTCCTGCTGCTTT
GGCCACCTGGGAGGATGCTGACGTTGTTCGCACCAGATTTCCGGACGCTGTCCCTTGGGGACAA
GCTCCAATTCCAGGGGGGGCAACTGTTATGCCTATGCCGGATGAGCTACTGGCAACGACCGAAG
GAGGTGTGTCGAACTGAAGACGTACTGCGAAAAGACGTTTTCGAGTGGCTATAGCATATTGAGT
CTATGTACTGATTTCTGACACTGGCTTGTGGGGCTAACGGTTGTTGAGTCGGGTGTGTGGTGTA
TAAATCGCCAGCCCGTAGGCACGTGACATCTATCGAAAAAGAGAGGAAAAATACTACCCGTCCT
CTGCTTCTCTCTTTCTTTCTCTTGCTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.212020688
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017