Plant Circular RNA Database

Detail information of Os07g0295800_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os07g0295800_circ_g.3
					
						ID in PlantcircBase
						osa_circ_033415
					
						Alias
						Os07circ06137/Os_ciR1459
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 11554926-11556122  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os07g0295800						
					
						Parent gene annotation
						
							Similar to peptidase. (Os07t0295800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0295800_circ_g.1 Os07g0295800_circ_g.2 Os07g0295800_circ_g.4 Os07g0295800_circ_g.5 Os07g0295800_circ_g.6 Os07g0295800_circ_g.7 Os07g0295800_circ_g.8 Os07g0295800_circ_g.9 						
					
						Support reads
						2/11/2
					
						Tissues
						leaf/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0295800-01:2

General Information
CircRNA Name	Os07g0295800_circ_g.3
ID in PlantcircBase	osa_circ_033415
Alias	Os07circ06137/Os_ciR1459
Organism	Oryza sativa
Position	chr7: 11554926-11556122 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os07g0295800
Parent gene annotation	Similar to peptidase. (Os07t0295800-01)
Parent gene strand	-
Alternative splicing	Os07g0295800_circ_g.1 Os07g0295800_circ_g.2 Os07g0295800_circ_g.4 Os07g0295800_circ_g.5 Os07g0295800_circ_g.6 Os07g0295800_circ_g.7 Os07g0295800_circ_g.8 Os07g0295800_circ_g.9
Support reads	2/11/2
Tissues	leaf/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0295800-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCAAAACACCATCCCACGACCAATCCAA
TTACTGACCCAACAATGACATCAGCTACAAAATATCcaaccatgaacttctgtcggagtgatac
ttttcttcaaaagataatagtgagttatccttcagccattttgctgcctcaggcgcattattga
aaagaaac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 115
Transcript exons: 11554926-11554988,11556071-11556122
CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC
CCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC
Transcript length: 189
Transcript exons: 11554926-11554988,11555997-11556122
CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGG
TAACAAGCCATGGAGGATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCA
AAACACCATCCCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC
Transcript length: 383
Transcript exons: 11554926-11555086,11555901-11556122
CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC
CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA
AACCATAGTGTGACTCCACAATACTATTAGCATCTGTAACAAAGGTGTGTTGAAGAACAACTCT
TTTAGGTGCTCCAGTGCTGTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACT
TGTAACAAGCCATGGAGGATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGAC
CAAAACACCATCCCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC
						
					

						Genomic sequence
						
							CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC
CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA
AACCATAGTGTGACTCCACAATACTATTAGCATCTGAAATCCATAAAATGAACATTTTTCAAGA
GGAATGCTATGACAAATCCAAAAATAAACAATGTGGTGGATAGACCTAAGCAGAGATAATTCTT
TGCTCACAACATAGCCATTTATGTTAAGCACATAAATATTGATGAAAAATACTAAGAGCATTCT
ACAGCCAAATAAGTTGCAAGAATACTGAGTCCAGAAGATAACAGAAATTTTATATGTAAACCAT
AAAATGGAAATGGATGGAGTTACTCTCTCCATTATTCTTTTATGTTGTTTTAACTTCCAAGAAA
AAGATCAAGGGGCTAACAATCTAGTTTTAACATGTCTACCCTCTCGGATGCTATTTGCTCCAAT
TAATAGCCCCTGGCCATTCCACTCATTCAATTAAAGATCAAATTTCTAATGACTTTCAATATGT
GCTATTTCGGAAATACTACCTAAAATTCCTAAATGACGTCTGTTTGAGAGCAATAGGAGGTTTC
AACAAAATCTAAAAAAGAACGAAGGAAATGATATATCAATGATGGAAAATGAACTGTTTTAGAT
AATGTGGTAATAAAAAATGGTTTTCAAAGACTAATAGAATGGGAAAGAAATGAAAGTTGGTTCC
AGGGCTTGATAAACAAGGGGAATTTATTTAGAGTTGATTCAAAAAGTTAGTCCAGTGATCAAAC
AATTATTTAAGTAACTGCATCTTCATAAGCAATACGCCTTTGAAAATGAAATGTCCGTTCCATT
TCTAATGGTTCAATACTTCAATTTGAATTATCCCAACAGGGACAGATTTCACCACTCCAGCAGC
CCAAAAGCAACAAACCTGTAACAAAGGTGTGTTGAAGAACAACTCTTTTAGGTGCTCCAGTGCT
GTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACTTGTAACAAGCCATGGAGG
ATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCAAAACACCATCCCACGA
CCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC
						
					

			
		

Sequences
Splice junction sequence	TTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCAAAACACCATCCCACGACCAATCCAA TTACTGACCCAACAATGACATCAGCTACAAAATATCcaaccatgaacttctgtcggagtgatac ttttcttcaaaagataatagtgagttatccttcagccattttgctgcctcaggcgcattattga aaagaaac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 115 Transcript exons: 11554926-11554988,11556071-11556122 CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC CCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC Transcript length: 189 Transcript exons: 11554926-11554988,11555997-11556122 CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGG TAACAAGCCATGGAGGATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCA AAACACCATCCCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC Transcript length: 383 Transcript exons: 11554926-11555086,11555901-11556122 CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA AACCATAGTGTGACTCCACAATACTATTAGCATCTGTAACAAAGGTGTGTTGAAGAACAACTCT TTTAGGTGCTCCAGTGCTGTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACT TGTAACAAGCCATGGAGGATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGAC CAAAACACCATCCCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC
Genomic sequence	CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA AACCATAGTGTGACTCCACAATACTATTAGCATCTGAAATCCATAAAATGAACATTTTTCAAGA GGAATGCTATGACAAATCCAAAAATAAACAATGTGGTGGATAGACCTAAGCAGAGATAATTCTT TGCTCACAACATAGCCATTTATGTTAAGCACATAAATATTGATGAAAAATACTAAGAGCATTCT ACAGCCAAATAAGTTGCAAGAATACTGAGTCCAGAAGATAACAGAAATTTTATATGTAAACCAT AAAATGGAAATGGATGGAGTTACTCTCTCCATTATTCTTTTATGTTGTTTTAACTTCCAAGAAA AAGATCAAGGGGCTAACAATCTAGTTTTAACATGTCTACCCTCTCGGATGCTATTTGCTCCAAT TAATAGCCCCTGGCCATTCCACTCATTCAATTAAAGATCAAATTTCTAATGACTTTCAATATGT GCTATTTCGGAAATACTACCTAAAATTCCTAAATGACGTCTGTTTGAGAGCAATAGGAGGTTTC AACAAAATCTAAAAAAGAACGAAGGAAATGATATATCAATGATGGAAAATGAACTGTTTTAGAT AATGTGGTAATAAAAAATGGTTTTCAAAGACTAATAGAATGGGAAAGAAATGAAAGTTGGTTCC AGGGCTTGATAAACAAGGGGAATTTATTTAGAGTTGATTCAAAAAGTTAGTCCAGTGATCAAAC AATTATTTAAGTAACTGCATCTTCATAAGCAATACGCCTTTGAAAATGAAATGTCCGTTCCATT TCTAATGGTTCAATACTTCAATTTGAATTATCCCAACAGGGACAGATTTCACCACTCCAGCAGC CCAAAAGCAACAAACCTGTAACAAAGGTGTGTTGAAGAACAACTCTTTTAGGTGCTCCAGTGCT GTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACTTGTAACAAGCCATGGAGG ATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCAAAACACCATCCCACGA CCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007125* osi_circ_016945 						
					
						PMCS
						0.448543539

Conservation Information
Conserved circRNAs	osi_circ_007125* osi_circ_016945
PMCS	0.448543539

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11556015-11555014(+)
11554934-11556113(-)
						
						Potential amino acid sequence
						
							MEVLASHRLAIGVTGPKHHPTTNPITDPTMTSATKYPTMNFCRSDTFLQKIIVSYPSAILLPQA
HY*(+)
MVGYFVADVIVGSVIGLVVGWCFGPVTPIASRWLAKTSILHGLLQVTVVGLAISSQLFPYSTGA
PKRVVLQHTFVTDANSIVESHYGFSVVDANSLEFLFNNAPEAAKWLKDNSLLSFEEKYHSDRSS
WLDIL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11556015-11555014(+) 11554934-11556113(-)
Potential amino acid sequence	MEVLASHRLAIGVTGPKHHPTTNPITDPTMTSATKYPTMNFCRSDTFLQKIIVSYPSAILLPQA HY(+) MVGYFVADVIVGSVIGLVVGWCFGPVTPIASRWLAKTSILHGLLQVTVVGLAISSQLFPYSTGA PKRVVLQHTFVTDANSIVESHYGFSVVDANSLEFLFNNAPEAAKWLKDNSLLSFEEKYHSDRSS WLDIL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0295800_circ_g.3

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