Detail information of Os07g0295800_circ_g.4


General Information
CircRNA Name Os07g0295800_circ_g.4
ID in PlantcircBase osa_circ_033416
Alias Os07circ06141/Os_ciR2621
Organism Oryza sativa
Position chr7: 11554926-11558213  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os07g0295800
Parent gene annotation Similar to peptidase. (Os07t0295800-01)
Parent gene strand -
Alternative splicing Os07g0295800_circ_g.1 Os07g0295800_circ_g.2 Os07g0295800_circ_g.3 Os07g0295800_circ_g.5 Os07g0295800_circ_g.6 Os07g0295800_circ_g.7 Os07g0295800_circ_g.8 Os07g0295800_circ_g.9
Support reads 2/6/2
Tissues leaf and panicle/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0295800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAATAAGAAAAAAAATTACCCATATAATCCTCGGGATAAATAGACCAGCTAATGAAGTTGGA
ACAAACATAAGGAATGCCAAATAAGGGTGAGCAAACcaaccatgaacttctgtcggagtgatac
ttttcttcaaaagataatagtgagttatccttcagccattttgctgcctcaggcgcattattga
aaagaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 766
Transcript exons: 11554926-11555086,11555901-11556122,11556396-11556520,11
557381-11557499,11557804-11557863,11558135-11558213
CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC
CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA
AACCATAGTGTGACTCCACAATACTATTAGCATCTGTAACAAAGGTGTGTTGAAGAACAACTCT
TTTAGGTGCTCCAGTGCTGTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACT
TGTAACAAGCCATGGAGGATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGAC
CAAAACACCATCCCACGACCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATCC
GTATGGTTTTGGGAGAGATCCCATCATTCCCATCTTCTCAATCAAGAACTGGATAAGGAAACCA
CCATAGTAAAGACAATAAAGGAGACATGGGATCATAGGTACCACATAACCAACCAACAACTTTG
GTGATTGTTTGTTCCAATGTTTCCAACTAATGCTACAGATAAAACGCCCAAGAAGCATCGACAT
GGAAATGAAGAATGTTAGAAAACCTCCACTCAGGCCAGCTAGCATGTAAACCAAAGTTATTAAG
GAATAGAGCCCGAAAGCACCCCAAAAATGTGCTTGCTCTGATAATCCCCATATAATCCTCGGGA
TAAATAGACCAGCTAATGAAGTTGGAACAAACATAAGGAATGCCAAATAAGGGTGAGCAAAC

Genomic sequence CAACCATGAACTTCTGTCGGAGTGATACTTTTCTTCAAAAGATAATAGTGAGTTATCCTTCAGC
CATTTTGCTGCCTCAGGCGCATTATTGAAAAGAAACTCCAATGAATTAGCATCAACCACAGAGA
AACCATAGTGTGACTCCACAATACTATTAGCATCTGAAATCCATAAAATGAACATTTTTCAAGA
GGAATGCTATGACAAATCCAAAAATAAACAATGTGGTGGATAGACCTAAGCAGAGATAATTCTT
TGCTCACAACATAGCCATTTATGTTAAGCACATAAATATTGATGAAAAATACTAAGAGCATTCT
ACAGCCAAATAAGTTGCAAGAATACTGAGTCCAGAAGATAACAGAAATTTTATATGTAAACCAT
AAAATGGAAATGGATGGAGTTACTCTCTCCATTATTCTTTTATGTTGTTTTAACTTCCAAGAAA
AAGATCAAGGGGCTAACAATCTAGTTTTAACATGTCTACCCTCTCGGATGCTATTTGCTCCAAT
TAATAGCCCCTGGCCATTCCACTCATTCAATTAAAGATCAAATTTCTAATGACTTTCAATATGT
GCTATTTCGGAAATACTACCTAAAATTCCTAAATGACGTCTGTTTGAGAGCAATAGGAGGTTTC
AACAAAATCTAAAAAAGAACGAAGGAAATGATATATCAATGATGGAAAATGAACTGTTTTAGAT
AATGTGGTAATAAAAAATGGTTTTCAAAGACTAATAGAATGGGAAAGAAATGAAAGTTGGTTCC
AGGGCTTGATAAACAAGGGGAATTTATTTAGAGTTGATTCAAAAAGTTAGTCCAGTGATCAAAC
AATTATTTAAGTAACTGCATCTTCATAAGCAATACGCCTTTGAAAATGAAATGTCCGTTCCATT
TCTAATGGTTCAATACTTCAATTTGAATTATCCCAACAGGGACAGATTTCACCACTCCAGCAGC
CCAAAAGCAACAAACCTGTAACAAAGGTGTGTTGAAGAACAACTCTTTTAGGTGCTCCAGTGCT
GTAAGGAAACAGTTGAGATGAGATCGCCAAACCAACCACTGTAACTTGTAACAAGCCATGGAGG
ATGGAGGTTTTGGCCAGCCATCGACTAGCAATAGGTGTTACTGGACCAAAACACCATCCCACGA
CCAATCCAATTACTGACCCAACAATGACATCAGCTACAAAATATCCTGCAAGAAGAATATTATA
ATCATGCTGTCGTTAGTTAATAATAATTGATTTTAGTTGTCCATGATATCCATCTATATAGCAT
GGCAAATGGGCAACACTTAATTCAAGTTTTTAACATCAGCTAAAGTTCCAATACCATTAAAGTA
AACCAGTAGGCAGCCATCTAACCAATTCATGCAAATATCATATTGCCTAGCTTAGCCACACTGT
CTGAATGCCATAAGTAGGTCAAGAAATTCAAACTGAAATCACAAACAAGGAAGGGTACAAACCG
TATGGTTTTGGGAGAGATCCCATCATTCCCATCTTCTCAATCAAGAACTGGATAAGGAAACCAC
CATAGTAAAGACAATAAAGGAGACATGGGATCATAGGTACCACATAACCAACCAACAACCTGTA
CATCATTAGTTCAAGCATTAATAATTGGATAAGTTGAGAAATAAATTACAGTGTAAGTTGAACA
TATACACAACATCTAACCTATGCTTTCTGTGCTTGATTCATGTAAAAAGATTAACCGGAGGTGC
ACACATGGGTCCATATGCTGTTTTATGAGACTAATCTGACCACACTATGCAACATGGGCTACAT
TGGCGCCCCCCCTAATGGGCTGAGGTATTATATTTGGTCTACAACTATCAATAATTACAAAGTG
GGTCATGTGCTAATCGATTTTTTTTTAAAAAAAAAAAAGCTATTTCAAGTCTATTTGACAAGTT
CTTCAGAACCAATCAAGCAACTCCGCTCACCATCAATCTTCAGGATTGACATGTTCCTAGAAAG
CTTCAGGACGGAGAAAAGAAGTCCTAGACATCATTGACTTCGGAACCACCTACAGTCCTATTAT
AGGTAACCCTACTGTACCAAAGCCCATGACTCTTCATAAAACAAATCATGATGAGTGGCTAAAT
CCTTTTTATGGCATTTCGTTTCAAGAAAACTGCATGCCAGCTAGGCTAGTGCTATTCTTATTTT
CAAGTATTCAGTTACGATGCAATGATGCATTAACACAAATTCAAATAAGATTAACATCTGTCCC
AAAAAGAGTTCACATTTCTACACGAATCCGGGCACCCACTTGTCGAGATTCTGTAGAAAAATAA
ACTCTTTTTGGGACAGAGGTAGCACGTATGATTGATGCTGCCGTGTTATGATGAAGTAAAGATA
CAGAAACCTCTAGGACTATTTACATTTCTATTGTGATAAACATAACAAGTCAATTAAGAGTCAA
TCAGTGTAAGATAGCATGGTTACTTTGGTGATTGTTTGTTCCAATGTTTCCAACTAATGCTACA
GATAAAACGCCCAAGAAGCATCGACATGGAAATGAAGAATGTTAGAAAACCTCCACTCAGGCCA
GCTAGCATGTAAACCTGCACAAAACCAAAATAGCCTAAGCACAAAGCAAGCATACCCAGGAAAC
TAATTGATACAAAATAATGTGCAGAAAAAAAAAAGCAGAAGTTAAAATATATATGACAAAAGCG
ATTAAATTTGAGTATGTAAAATTGTGGCCTTTTCATGTATATTCATGGCTGAACTGATGTGGCT
ATATACATGAAGAATATTATGATTTTTTATATCACTTCAAACGTGAGACTGATTTACCATACAA
GAAAATGTTGTGTAACAGTGCTATGTAAGCATATAAGGAGGCAAAAGATGTTCAGAACTTACCA
AAGTTATTAAGGAATAGAGCCCGAAAGCACCCCAAAAATGTGCTTGCTCTGATAATCCCTAGAA
TTGAACAAACAATTATAAAAATATTAGTCTCTTACATTACAGTTTCACTGGATGCAAAACAAAC
AGATATAAACAAAGGGAATACACCGCGAATTTTCTATTGGAACAAATATTGCATATAAATCCAT
ATAGCTGAACCCTTTCTTTATATTCTCAAAAGAAACGTAACTTCCAAAACTACTACATTTTCAA
TCATGCAGAAAAGAATGGGAAATTAATAACAATGGGCACTTGACTACTTGCAATGAATAAGAAA
AAAAATTACCCATATAATCCTCGGGATAAATAGACCAGCTAATGAAGTTGGAACAAACATAAGG
AATGCCAAATAAGGGTGAGCAAAC
Conservation Information
Conserved circRNAs osi_circ_007126* osi_circ_016946
PMCS 0.319260788
Functional Information
Coding potential Y
Potential coding position 11558187-11557419(-)
Potential amino acid sequence MFVPTSLAGLFIPRIIWGLSEQAHFWGAFGLYSLITLVYMLAGLSGGFLTFFISMSMLLGRFIC
SISWKHWNKQSPKLLVGYVVPMIPCLLYCLYYGGFLIQFLIEKMGMMGSLPKPYGYFVADVIVG
SVIGLVVGWCFGPVTPIASRWLAKTSILHGLLQVTVVGLAISSQLFPYSTGAPKRVVLQHTFVT
DANSIVESHYGFSVVDANSLEFLFNNAPEAAKWLKDNSLLSFEEKYHSDRSSWLVCSPLFGIPY
VCSNFISWSIYPEDYMGIIRASTFLGCFRALFLNNFGLHASWPEWRFSNILHFHVDASWAFYL*
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA