Plant Circular RNA Database

Detail information of Os07g0295800_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os07g0295800_circ_g.9
					
						ID in PlantcircBase
						osa_circ_033421
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 11561247-11563227  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0295800						
					
						Parent gene annotation
						
							Similar to peptidase. (Os07t0295800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0295800_circ_g.1 Os07g0295800_circ_g.2 Os07g0295800_circ_g.3 Os07g0295800_circ_g.4 Os07g0295800_circ_g.5 Os07g0295800_circ_g.6 Os07g0295800_circ_g.7 Os07g0295800_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0295800-01:4

General Information
CircRNA Name	Os07g0295800_circ_g.9
ID in PlantcircBase	osa_circ_033421
Alias	NA
Organism	Oryza sativa
Position	chr7: 11561247-11563227 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0295800
Parent gene annotation	Similar to peptidase. (Os07t0295800-01)
Parent gene strand	-
Alternative splicing	Os07g0295800_circ_g.1 Os07g0295800_circ_g.2 Os07g0295800_circ_g.3 Os07g0295800_circ_g.4 Os07g0295800_circ_g.5 Os07g0295800_circ_g.6 Os07g0295800_circ_g.7 Os07g0295800_circ_g.8
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0295800-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACCACCCAGAACAAAGATAATATCAAGTCCTGGAATGTTTGTAATGTCTTCAGCAAATATCCT
ATAATCTGTATCACCTGGGATTATTCCAAACATATCcaattcattgcatttttcgtgaatagca
atcttacagctgcagccacagcaggaatgactattgcaaggatggccccaaatgcatgaagcag
cattcctg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 536
Transcript exons: 11561247-11561343,11562567-11562702,11562842-11563004,11
563088-11563227
CAATTCATTGCATTTTTCGTGAATAGCAATCTTACAGCTGCAGCCACAGCAGGAATGACTATTG
CAAGGATGGCCCCAAATGCATGAAGCAGCATTCCTCTCATTAAATCCAGAACAGTCAGAGACCA
TGACATCAAGGTAATGTTTGGAGACGTCAGGAATAGTGGTGCAAGCAGGAAAATGGCTACTGGA
AGACTGTGGAGAACCAAAGAGACACCACGGGGATAAATAACCATGAACCAAGTCAAGTAATCAA
AAAAGATAGCTCTCAAATCATCCTTTATAGGCATAGCAGCTTCATTAGATCGCTTATTCTCTTT
CAACAGCATGGGAGAATTTGTAAAAGCCTTCACAAGGTTGAATAAATTTTCTCCACGTGCTTGA
ATACTTCCAGGAAGCAAGTTTTCCACAGTATCATATGAAGTATGGTAAAAATAACCACCCAGAA
CAAAGATAATATCAAGTCCTGGAATGTTTGTAATGTCTTCAGCAAATATCCTATAATCTGTATC
ACCTGGGATTATTCCAAACATATC
						
					

						Genomic sequence
						
							CAATTCATTGCATTTTTCGTGAATAGCAATCTTACAGCTGCAGCCACAGCAGGAATGACTATTG
CAAGGATGGCCCCAAATGCATGAAGCAGCATTCCTGCGAGCACATGCGAGACAATATTACGGTT
AGCCAGCTGATACAGTACGCAAAGTATAGTACTCCTTCTAGATTCATGGTAGGATGTGTCCCAT
CCGGTCCTAGGTTCTTATATTTTGGGATGGAGGGGGCATAAAATTGCCTAGCAGAAAAATACTA
TTTTACTCATATCTACCCCCTTTGTTCCCAAATATAAGCATTTCTACGTTGTTTAGCAGATATT
AAGGTTTGAGAAAAAAGGCTATAGTTCCCCTCATTAAATGAGGGGTAGTTGGGACTCGGGAGTG
GGAGGGTAGTTGGGGGTAAATGAGGAGAAATTTGAACGAGAGGTGATTGATGGGACAAGTAGTT
AGCATGAATGAGCAAAACACAGAAAAGGTAAATAGCTCCACTGTATCATTATTTTTGCCTAAAA
TTGTTTTACCAAGCAATCAGAATTAGAAATGCAAAAATTGACCAAGTTTCAGCCTCATCTAACC
CCAAAAACAAGGTTATACATGCATATTTTGCAGAAAATTAGTTTCTTTACATAATGTGCAAAAA
CCTGCCTCTATATCTTGACCAAACTTATAACTACAATGACTACTAGTATAAGACTAAAAAAATC
CTATACATATCAATCGATAAAAGATTATCTTCATAGCATAAAAAGATTTGAAACACTTGTACTT
TATTACAAGGAATAAATCCATTTTATGCTCCCTAACTATCGTGAAAGTACAAAATGCACCATCA
ACTTTAAAATCGTGTATTTAATGTCTTCTAATATTGGCCTATTGGGCCAAAACTCACCCTGCAA
ACATAACTTTGACCACTCATTTCCAAAATGAGATATATTTGTCAAAAACAAATACAATTACACT
ATATAAGTATTTCTCAAGATGAATCTACAAATGTGGTTTCACATTGTATTAAAAAAATATGTTG
ATGGTCTGCATAGGTATTGTTGACAACAGTATGGTATATTATTACTCTTATTTCAAAGATTAAA
GAAATACAATCTGCAAATTCTTGCCCTCTGAAAGTCCGAAGCATAATGGAAGCAAAAATGAAGC
ACAGGCAAGCATGTCCAAGTTGAAATAAGTCCCACCATGGTTATGACCCAACTTTGCTAATGAT
CACCAACGTAAATACACCATCCGAGTTGCAGTATTCTCGTAAGTACTAAGGAAAGCATAATACA
TACCATTTTCAGAAATCAGAATATATTTGCATCCACATACCTCTCATTAAATCCAGAACAGTCA
GAGACCATGACATCAAGGTAATGTTTGGAGACGTCAGGAATAGTGGTGCAAGCAGGAAAATGGC
TACTGGAAGACTGTGGAGAACCAAAGAGACACCACGGGGATAAATAACCTGGATTTTAAAAACG
AAGGATGTTATTTTAGTCACAAAAAAATGAAAGAAAAAATGGCACATTTATCTTTCAATACAGC
ATATAGTAGCTAGTCACACTTGTCATCCTGCAAATTTCAAGAATACAAAGTCAGCATACCATGA
ACCAAGTCAAGTAATCAAAAAAGATAGCTCTCAAATCATCCTTTATAGGCATAGCAGCTTCATT
AGATCGCTTATTCTCTTTCAACAGCATGGGAGAATTTGTAAAAGCCTTCACAAGGTTGAATAAA
TTTTCTCCACGTGCTTGAATACTTCCAGGACTGAAAGAGAACATGGGATTCCATAATTATACTA
TTTCATGTGAAATATTGGAAATTTTATCATGGCATAGTTTAGTACATACAGCAAGTTTTCCACA
GTATCATATGAAGTATGGTAAAAATAACCACCCAGAACAAAGATAATATCAAGTCCTGGAATGT
TTGTAATGTCTTCAGCAAATATCCTATAATCTGTATCACCTGGGATTATTCCAAACATATC
						
					

			
		

Sequences
Splice junction sequence	AACCACCCAGAACAAAGATAATATCAAGTCCTGGAATGTTTGTAATGTCTTCAGCAAATATCCT ATAATCTGTATCACCTGGGATTATTCCAAACATATCcaattcattgcatttttcgtgaatagca atcttacagctgcagccacagcaggaatgactattgcaaggatggccccaaatgcatgaagcag cattcctg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 536 Transcript exons: 11561247-11561343,11562567-11562702,11562842-11563004,11 563088-11563227 CAATTCATTGCATTTTTCGTGAATAGCAATCTTACAGCTGCAGCCACAGCAGGAATGACTATTG CAAGGATGGCCCCAAATGCATGAAGCAGCATTCCTCTCATTAAATCCAGAACAGTCAGAGACCA TGACATCAAGGTAATGTTTGGAGACGTCAGGAATAGTGGTGCAAGCAGGAAAATGGCTACTGGA AGACTGTGGAGAACCAAAGAGACACCACGGGGATAAATAACCATGAACCAAGTCAAGTAATCAA AAAAGATAGCTCTCAAATCATCCTTTATAGGCATAGCAGCTTCATTAGATCGCTTATTCTCTTT CAACAGCATGGGAGAATTTGTAAAAGCCTTCACAAGGTTGAATAAATTTTCTCCACGTGCTTGA ATACTTCCAGGAAGCAAGTTTTCCACAGTATCATATGAAGTATGGTAAAAATAACCACCCAGAA CAAAGATAATATCAAGTCCTGGAATGTTTGTAATGTCTTCAGCAAATATCCTATAATCTGTATC ACCTGGGATTATTCCAAACATATC
Genomic sequence	CAATTCATTGCATTTTTCGTGAATAGCAATCTTACAGCTGCAGCCACAGCAGGAATGACTATTG CAAGGATGGCCCCAAATGCATGAAGCAGCATTCCTGCGAGCACATGCGAGACAATATTACGGTT AGCCAGCTGATACAGTACGCAAAGTATAGTACTCCTTCTAGATTCATGGTAGGATGTGTCCCAT CCGGTCCTAGGTTCTTATATTTTGGGATGGAGGGGGCATAAAATTGCCTAGCAGAAAAATACTA TTTTACTCATATCTACCCCCTTTGTTCCCAAATATAAGCATTTCTACGTTGTTTAGCAGATATT AAGGTTTGAGAAAAAAGGCTATAGTTCCCCTCATTAAATGAGGGGTAGTTGGGACTCGGGAGTG GGAGGGTAGTTGGGGGTAAATGAGGAGAAATTTGAACGAGAGGTGATTGATGGGACAAGTAGTT AGCATGAATGAGCAAAACACAGAAAAGGTAAATAGCTCCACTGTATCATTATTTTTGCCTAAAA TTGTTTTACCAAGCAATCAGAATTAGAAATGCAAAAATTGACCAAGTTTCAGCCTCATCTAACC CCAAAAACAAGGTTATACATGCATATTTTGCAGAAAATTAGTTTCTTTACATAATGTGCAAAAA CCTGCCTCTATATCTTGACCAAACTTATAACTACAATGACTACTAGTATAAGACTAAAAAAATC CTATACATATCAATCGATAAAAGATTATCTTCATAGCATAAAAAGATTTGAAACACTTGTACTT TATTACAAGGAATAAATCCATTTTATGCTCCCTAACTATCGTGAAAGTACAAAATGCACCATCA ACTTTAAAATCGTGTATTTAATGTCTTCTAATATTGGCCTATTGGGCCAAAACTCACCCTGCAA ACATAACTTTGACCACTCATTTCCAAAATGAGATATATTTGTCAAAAACAAATACAATTACACT ATATAAGTATTTCTCAAGATGAATCTACAAATGTGGTTTCACATTGTATTAAAAAAATATGTTG ATGGTCTGCATAGGTATTGTTGACAACAGTATGGTATATTATTACTCTTATTTCAAAGATTAAA GAAATACAATCTGCAAATTCTTGCCCTCTGAAAGTCCGAAGCATAATGGAAGCAAAAATGAAGC ACAGGCAAGCATGTCCAAGTTGAAATAAGTCCCACCATGGTTATGACCCAACTTTGCTAATGAT CACCAACGTAAATACACCATCCGAGTTGCAGTATTCTCGTAAGTACTAAGGAAAGCATAATACA TACCATTTTCAGAAATCAGAATATATTTGCATCCACATACCTCTCATTAAATCCAGAACAGTCA GAGACCATGACATCAAGGTAATGTTTGGAGACGTCAGGAATAGTGGTGCAAGCAGGAAAATGGC TACTGGAAGACTGTGGAGAACCAAAGAGACACCACGGGGATAAATAACCTGGATTTTAAAAACG AAGGATGTTATTTTAGTCACAAAAAAATGAAAGAAAAAATGGCACATTTATCTTTCAATACAGC ATATAGTAGCTAGTCACACTTGTCATCCTGCAAATTTCAAGAATACAAAGTCAGCATACCATGA ACCAAGTCAAGTAATCAAAAAAGATAGCTCTCAAATCATCCTTTATAGGCATAGCAGCTTCATT AGATCGCTTATTCTCTTTCAACAGCATGGGAGAATTTGTAAAAGCCTTCACAAGGTTGAATAAA TTTTCTCCACGTGCTTGAATACTTCCAGGACTGAAAGAGAACATGGGATTCCATAATTATACTA TTTCATGTGAAATATTGGAAATTTTATCATGGCATAGTTTAGTACATACAGCAAGTTTTCCACA GTATCATATGAAGTATGGTAAAAATAACCACCCAGAACAAAGATAATATCAAGTCCTGGAATGT TTGTAATGTCTTCAGCAAATATCCTATAATCTGTATCACCTGGGATTATTCCAAACATATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007127* osi_circ_016949 						
					
						PMCS
						0.239290178

Conservation Information
Conserved circRNAs	osi_circ_007127* osi_circ_016949
PMCS	0.239290178

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11563118-11561330(+)
11563226-11563214(-)
11562600-11563214(-)
						
						Potential amino acid sequence
						
							MVKITTQNKDNIKSWNVCNVFSKYPIICITWDYSKHIQFIAFFVNSNLTAAATAGMTIARMAPN
A*(+)
MFGIIPGDTDYRIFAEDITNIPGLDIIFVLGGYFYHTSYDTVENLLPGSIQARGENLFNLVKAF
TNSPMLLKENKRSNEAAMPIKDDLRAIFFDYLTWFMVIYPRGVSLVLHSLPVAIFLLAPLFLTS
PNITLMSWSLTVLDLMRGMLLHAFGAILAIVIPAVAAAVRLLFTKNAMNWICLE*(-)
MVSDCSGFNERNAASCIWGHPCNSHSCCGCSCKIAIHEKCNELDMFGIIPGDTDYRIFAEDITN
IPGLDIIFVLGGYFYHTSYDTVENLLPGSIQARGENLFNLVKAFTNSPMLLKENKRSNEAAMPI
KDDLRAIFFDYLTWFMVIYPRGVSLVLHSLPVAIFLLAPLFLTSPNITLMSWSLTVLDLMRGML
LHAFGAILAIVIPAVAAAVRLLFTKNAMNWICLE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11563118-11561330(+) 11563226-11563214(-) 11562600-11563214(-)
Potential amino acid sequence	MVKITTQNKDNIKSWNVCNVFSKYPIICITWDYSKHIQFIAFFVNSNLTAAATAGMTIARMAPN A(+) MFGIIPGDTDYRIFAEDITNIPGLDIIFVLGGYFYHTSYDTVENLLPGSIQARGENLFNLVKAF TNSPMLLKENKRSNEAAMPIKDDLRAIFFDYLTWFMVIYPRGVSLVLHSLPVAIFLLAPLFLTS PNITLMSWSLTVLDLMRGMLLHAFGAILAIVIPAVAAAVRLLFTKNAMNWICLE(-) MVSDCSGFNERNAASCIWGHPCNSHSCCGCSCKIAIHEKCNELDMFGIIPGDTDYRIFAEDITN IPGLDIIFVLGGYFYHTSYDTVENLLPGSIQARGENLFNLVKAFTNSPMLLKENKRSNEAAMPI KDDLRAIFFDYLTWFMVIYPRGVSLVLHSLPVAIFLLAPLFLTSPNITLMSWSLTVLDLMRGML LHAFGAILAIVIPAVAAAVRLLFTKNAMNWICLE*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0295800_circ_g.9

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