Detail information of Os03g0682600_circ_g.1


General Information
CircRNA Name Os03g0682600_circ_g.1
ID in PlantcircBase osa_circ_020990
Alias Os_ciR5352
Organism Oryza sativa
Position chr3: 27166178-27170432  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0682600
Parent gene annotation Protein argonaute 11. (Os03t0682600-00)
Parent gene strand -
Alternative splicing Os03g0682600_circ_igg.1 Os03g0682600_circ_g.2 Os03g0682600_circ_g.3 Os03g0682600_circ_g.4 Os03g0682600_circ_g.5
Support reads 3/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0682600-00:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCAACTCCTTGCAAAACGTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCA
TGCCCAGTAATTGATGGATCCACCATTGAGCATCCTgtgtagcacaaatggtaagtcaatgttt
gcaatgcatcggcgctgaaattgttctcgtcgaatagaacatagtaatgcgtggggtggcttgt
tccctgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTAGCACAAATGGTAAGTCAATGTTTGCAATGCATCGGCGCTGAAATTGTTCTCGTCGAATA
GAACATAGTAATGCGTGGGGTGGCTTGTTCCCTGTTAGAAATGAAAAATTATTCCATTACAAGT
TAGAAGAGGGCAGTAGATCACAATGCAGGAACTAGACCAAGATGATGTTCTCAATCTCCTTAAC
ACGTTTCTGTAGATTTTTTTTTTGCCGGGTCGGCCAAAGGATAGCCGATCAATTTCATTAAAAT
TTGGGGGGGGGGGGGGAAATACAGTAAAATGTTACAATGACATTACAATACCGCGGTAGCCAGA
GAAAGACCTAGCCAACCAAGAACGAGAAAAGAAAGCAGGGCTAAACCACCCGCAGACAGTCATG
GCGATTACTCGTGAAATTGGGAGAAAATTCCAGCCACCCTCCATGTTTCTGTAGATGTATTCGT
GAGTTCCTAACCTATCCCACATATATGGACCTGGAATTTAGTTCAATTTCCAGGACCATCCCCA
GGGATTGGCTGGGATTTGGGCCTTGCTAATCAAAGCCTAACTAAATGAGAAAATGGCATGCTAC
TTCACTGAGTAACTGCTTACCTGAATGCCAGAATGGCTACAAAGGTAAAAGTCAAATTCACTGG
GATGGCATATCTTAGTGTCAACAACAGTTCCTAAGAAGAAAAAAGTTATTACTATTTGAGATAA
TACAAAATTTTGCATCAGGCTAATTGCTGCCTGGAAAGTTAATTCTTACCAGGTAAGATGTTTC
TGCTTCGATCCATCTGATCCCTCGCGTGATGATCTTCAGGAAAAAGACGGGTGTGATGCCTCTT
TTGCACCACAACAAAGGTAACTGGAGGGAGGTAGCCCTCCTCTATGCTAGCACAAGCCTGCAGG
CAGAAGCATACATAGACTAAGAAGATCACAAAACAACACAAATGCAAACTGCAAGCACACAAAA
CATAGAAACATGAGAGATAATGAGGCTGAAAAGGACCTTCCGAATTGCATCCATTTCACTAAGC
AGAACTTGGCTAAACTGGCCTTCACTAACACCGTCTCTGCATGCCAAGAAAATTGAGTTCTCGT
AGCAGATAAAAAAGGAGAATTAGAATAACATAGCACATATTATTTGCTTCACAAACCGATAAAA
TATTATCCTTCCAGGTTTGTAGCTGCCATTTGCTTTACGGAAAGACTCTATCAACTCTCTGAAA
CAACAAAGTTTTTTAATGAAAACATGCGCGAGCAAGGTTATTGCAGCAAAAGAATAATTAAATT
AGACACTGTCCATGCCAAAAGTACCTGATCATTCCACCATAAACAAGTCTGTTCTGTGAATCTT
TCACCTCTGTGAAGAGATCAGCTATGATCTCTTCCCTATGGCTTTGCGAAGAAACCGAGCATTT
GTATTTTGACACTTCTGGCCAATCCATCGATGCAACAACCTGCTGACAGTATTAACATAACTTG
AAACATGAAGCATATTATGATAAGGAATCGTACGAGCAAGATAACTAGTAAGAGAGTACAGATT
TCTCGTAAAGGAGTGAAATCACTCATTGCTAGTATCTGTGAATTTTAAAAGAGGACAATACTGA
AAGCAAGATATAGTAGCTACACCAACACAAAAGAAGCATTCAATTTAAATCGAGATCTTTTACG
GTGTTTGCATTCCAAAATAGGGAAAAATCCAATGCTCCTCAATGCCAGATACCATGTAAAAAGT
ATTTGAGTATTGGTTAGGTAAGTATCAAGGGTAAAATAATAAATTTGCTAGTAGAGAGAAAAAG
TATAATTGTCTCTAAATTTAAATCGGTACCGTGTAGGTTCCAATTAAGTCGTTTGCCTATTAAT
GGCCTATAGGTTCTCGTTTGCGTGGTTTTCTCTAGATTTACATTGTGTTCTTCAATGTTCTTGT
TTGCGTGCACGTGCTTTCTTCTAGATTTATATTTTGTTCCAAATAACACGTTTAACGTTTATTG
GCACAAAAGTTCTGGTTTGTGCGGTTTTATCTTTTTATGTTTTGTTCTCCTCAACCATGTTGGC
GCTTCTCTCTCTGTTTAATTCTGATGAACGAGTTCTAACCCAAGAATAAGAACGGGACAGATGG
GGAAGAAGAAAAAAAGATCCAATTTTAGAGCTTTTACGGTGTTTGCGAGATACTTAGAAGTATT
GAGAGGTGGAGTAATATAAGCCGTTGATCAAGAGAGGGGCAAGGTATGGAAAAAGAATTTTGTA
ATCAATGGCAGTGAAGTAATTAGTTCAATATGAACAACGTAAATCGGGCATTAATTTAGTTATT
GAATAGATCTCACGAAAAAAGATCAGATTGGATCTTTTTTTTCTTCTTCCCCATCGGTCCTATT
CTTATTCTTGGGTTAGAACTTGTTCATCAAAATTAAACAGAGCGAGAAGCGCCCACATGGTTGA
GGATTCAATATGAGATCGGGTAAGATCTACTTTACATAGTTGATTAGTTATGTATGCAGTTCAC
ATATTCCATCGTTTATCATGTTCAAATGGAAGCAAGCATGATGAATATTTTATCTACAGTTCAT
GTTTTCGAGGGATATATCGATAAAATATTTAACTTAAATTGATTACCTTCGGTGATATTTTAAC
CGGTCAGGTTCTTGAAACACATTAAAAATCTCTTCTTGAAACAAAATATAAATCTCTAAAAGAA
TTAAATGAATTAGTTTTGCCATGTTCTTTGGAATAAAACATAAAAAGATAAAACCGCGCAAACC
AGAACTTTTGCCCCAATAAACGTGTTATTTGGAATAAAATATAAATCTAGAAGAAAACACGTGC
ACGCAAACAAGAACATTGAAGAACACAATGTAAATCTAGAGAAAACCACGCAAAAGTTAACCTA
TAGGCCATTAATAGGCAAACGACTTAATTGGTACCTACACGGTACCTATTTAAATTGAGAGACA
ATTATACCTTGTTCTCTCTACTAGCAAATTTATTATTTTACCCTTGATACCTAAGTACCTAACC
AATACTTAAATACTTTTTACATGGTACCTGTCATTAAGGAGCATTGGATTTTTACCTATCTTGA
AATGCAAACACCATAAAAAATCTCGATTTTGCTCCGGTCCAGCAAAAAGTATCTCGAGGTACCG
CCGTACCGGTGCCTCACGGTACCAAATCGTCCAGTACCTCGAGATACTTTTTCTCGACCGGAGC
AAATCTCTTCAATTTATATTCCCCAGCCCGCAATTGACGTATAACATAAACACTTCTGTTTATA
ATTCTGTCACATACAATCACCGAAGTCATTGGCTATATCTTTTACACTGAGGCACATTTAAAAA
CTAAATGGAATTAACTTACATCGCCATGAAAACAAGTAGAGATCAAGAAAATACTAACCGCAGC
AATTGATGGAGATGAATCCTCCCCGGCAGGTGGATGGGTCACGTCAGCTCCAAAGATCATTGTA
GGCATATCTGTTAACAGAGGAATTCTCCTATGCAAAGCATCTTCCAGTACTGTATTTCGTCCAC
CAACCTATGTTCAAATTGTTAGTGGAGTGAGCTACTCTCAAATAATAGCCAAATTGTTCGTAAA
GCTAAAGAGACAGTGCCCACGTAATCCATGTACTGTCAAAGTAGTATATCCTACCTTAACATTG
ATTTTAAGTGCCAGGTTTCGGAGATATTGTGTTGGCGGACATTCTGAACATTCCTAGCTAAACA
GCACTGAGTTATCACACCAAGTTCAGTTTCACAAAGCCGCTTTATCCTTCCTGCAGATATTACA
GATGTGAGACAACAGATGGTTAGCAAAAACACTGCCAAAAAGAAAAGGTATACCTGAAAAATAA
TTATCATCAATTTGAGAAGTAATTTATGTGCTTACCATAAAAGACAGTTGCATTTGCATCAGGT
AGTACTATTACCAGTAACTCAAGTTGTTGCCCGATCACACCTTGTTGAGAAAGAAATTCTGCAG
ATTGTCGATGTATATCTCTGACAGCAGCATCTAAGTGATCTTGGCGTTCTTGCCTAATACGGAC
ACATGGTTCCCCGGTAATTTGCTATGGAAAGGAGGATTATACAATTAAACAAACGTATACATGC
CCGAAAGAGGACCATATAGAAAGATAAAATCTTTACCATGCCAATGCTATTGCACACACGAACC
AACTCCTTGCAAAACGTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCATGCCC
AGTAATTGATGGATCCACCATTGAGCATCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.095857965
Functional Information
Coding potential Y
Potential coding position 27170411-27166220(+)
27170431-27170392(-)
Potential amino acid sequence MDPPLSILCSTNGKSMFAMHRR*(+)
MLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQITGEPCVRIRQERQDHLDAAVRD
IHRQSAEFLSQQGVIGQQLELLVIVLPDANATVFYGRIKRLCETELGVITQCCLARNVQNVGGR
NTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSPSIAAVVASMDWPEVSKYKCSVSSQSH
REEIIADLFTEVKDSQNRLVYGGMIRELIESFRKANGSYKPGRIIFYRDGVSEGQFSQVLLSEM
DAIRKACASIEEGYLPPVTFVVVQKRHHTRLFPEDHHARDQMDRSRNILPGTVVDTKICHPSEF
DFYLCSHSGIQGTSHPTHYYVLFDENNFSADALQTLTYHLCYTGCSMVDPSITGHA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017