Plant Circular RNA Database

Detail information of Os03g0682600_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os03g0682600_circ_g.5
					
						ID in PlantcircBase
						osa_circ_020994
					
						Alias
						Os_ciR1487
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 27167482-27170432  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os03g0682600						
					
						Parent gene annotation
						
							Protein argonaute 11. (Os03t0682600-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0682600_circ_igg.1 Os03g0682600_circ_g.1 Os03g0682600_circ_g.2 Os03g0682600_circ_g.3 Os03g0682600_circ_g.4 						
					
						Support reads
						9/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0682600-00:5

General Information
CircRNA Name	Os03g0682600_circ_g.5
ID in PlantcircBase	osa_circ_020994
Alias	Os_ciR1487
Organism	Oryza sativa
Position	chr3: 27167482-27170432 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os03g0682600
Parent gene annotation	Protein argonaute 11. (Os03t0682600-00)
Parent gene strand	-
Alternative splicing	Os03g0682600_circ_igg.1 Os03g0682600_circ_g.1 Os03g0682600_circ_g.2 Os03g0682600_circ_g.3 Os03g0682600_circ_g.4
Support reads	9/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0682600-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAACCAACTCCTTGCAAAACGTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCA
TGCCCAGTAATTGATGGATCCACCATTGAGCATCCTctgatcattccaccataaacaagtctgt
tctgtgaatctttcacctctgtgaagagatcagctatgatctcttccctatggctttgcgaaga
aaccgagc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 656
Transcript exons: 27167482-27167624,27169564-27169701,27169866-27169939,27
170053-27170230,27170310-27170432
CTGATCATTCCACCATAAACAAGTCTGTTCTGTGAATCTTTCACCTCTGTGAAGAGATCAGCTA
TGATCTCTTCCCTATGGCTTTGCGAAGAAACCGAGCATTTGTATTTTGACACTTCTGGCCAATC
CATCGATGCAACAACCGCAGCAATTGATGGAGATGAATCCTCCCCGGCAGGTGGATGGGTCACG
TCAGCTCCAAAGATCATTGTAGGCATATCTGTTAACAGAGGAATTCTCCTATGCAAAGCATCTT
CCAGTACTGTATTTCGTCCACCAACATTCTGAACATTCCTAGCTAAACAGCACTGAGTTATCAC
ACCAAGTTCAGTTTCACAAAGCCGCTTTATCCTTCCATAAAAGACAGTTGCATTTGCATCAGGT
AGTACTATTACCAGTAACTCAAGTTGTTGCCCGATCACACCTTGTTGAGAAAGAAATTCTGCAG
ATTGTCGATGTATATCTCTGACAGCAGCATCTAAGTGATCTTGGCGTTCTTGCCTAATACGGAC
ACATGGTTCCCCGGTAATTTGCATGCCAATGCTATTGCACACACGAACCAACTCCTTGCAAAAC
GTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCATGCCCAGTAATTGATGGATC
CACCATTGAGCATCCT
						
					

						Genomic sequence
						
							CTGATCATTCCACCATAAACAAGTCTGTTCTGTGAATCTTTCACCTCTGTGAAGAGATCAGCTA
TGATCTCTTCCCTATGGCTTTGCGAAGAAACCGAGCATTTGTATTTTGACACTTCTGGCCAATC
CATCGATGCAACAACCTGCTGACAGTATTAACATAACTTGAAACATGAAGCATATTATGATAAG
GAATCGTACGAGCAAGATAACTAGTAAGAGAGTACAGATTTCTCGTAAAGGAGTGAAATCACTC
ATTGCTAGTATCTGTGAATTTTAAAAGAGGACAATACTGAAAGCAAGATATAGTAGCTACACCA
ACACAAAAGAAGCATTCAATTTAAATCGAGATCTTTTACGGTGTTTGCATTCCAAAATAGGGAA
AAATCCAATGCTCCTCAATGCCAGATACCATGTAAAAAGTATTTGAGTATTGGTTAGGTAAGTA
TCAAGGGTAAAATAATAAATTTGCTAGTAGAGAGAAAAAGTATAATTGTCTCTAAATTTAAATC
GGTACCGTGTAGGTTCCAATTAAGTCGTTTGCCTATTAATGGCCTATAGGTTCTCGTTTGCGTG
GTTTTCTCTAGATTTACATTGTGTTCTTCAATGTTCTTGTTTGCGTGCACGTGCTTTCTTCTAG
ATTTATATTTTGTTCCAAATAACACGTTTAACGTTTATTGGCACAAAAGTTCTGGTTTGTGCGG
TTTTATCTTTTTATGTTTTGTTCTCCTCAACCATGTTGGCGCTTCTCTCTCTGTTTAATTCTGA
TGAACGAGTTCTAACCCAAGAATAAGAACGGGACAGATGGGGAAGAAGAAAAAAAGATCCAATT
TTAGAGCTTTTACGGTGTTTGCGAGATACTTAGAAGTATTGAGAGGTGGAGTAATATAAGCCGT
TGATCAAGAGAGGGGCAAGGTATGGAAAAAGAATTTTGTAATCAATGGCAGTGAAGTAATTAGT
TCAATATGAACAACGTAAATCGGGCATTAATTTAGTTATTGAATAGATCTCACGAAAAAAGATC
AGATTGGATCTTTTTTTTCTTCTTCCCCATCGGTCCTATTCTTATTCTTGGGTTAGAACTTGTT
CATCAAAATTAAACAGAGCGAGAAGCGCCCACATGGTTGAGGATTCAATATGAGATCGGGTAAG
ATCTACTTTACATAGTTGATTAGTTATGTATGCAGTTCACATATTCCATCGTTTATCATGTTCA
AATGGAAGCAAGCATGATGAATATTTTATCTACAGTTCATGTTTTCGAGGGATATATCGATAAA
ATATTTAACTTAAATTGATTACCTTCGGTGATATTTTAACCGGTCAGGTTCTTGAAACACATTA
AAAATCTCTTCTTGAAACAAAATATAAATCTCTAAAAGAATTAAATGAATTAGTTTTGCCATGT
TCTTTGGAATAAAACATAAAAAGATAAAACCGCGCAAACCAGAACTTTTGCCCCAATAAACGTG
TTATTTGGAATAAAATATAAATCTAGAAGAAAACACGTGCACGCAAACAAGAACATTGAAGAAC
ACAATGTAAATCTAGAGAAAACCACGCAAAAGTTAACCTATAGGCCATTAATAGGCAAACGACT
TAATTGGTACCTACACGGTACCTATTTAAATTGAGAGACAATTATACCTTGTTCTCTCTACTAG
CAAATTTATTATTTTACCCTTGATACCTAAGTACCTAACCAATACTTAAATACTTTTTACATGG
TACCTGTCATTAAGGAGCATTGGATTTTTACCTATCTTGAAATGCAAACACCATAAAAAATCTC
GATTTTGCTCCGGTCCAGCAAAAAGTATCTCGAGGTACCGCCGTACCGGTGCCTCACGGTACCA
AATCGTCCAGTACCTCGAGATACTTTTTCTCGACCGGAGCAAATCTCTTCAATTTATATTCCCC
AGCCCGCAATTGACGTATAACATAAACACTTCTGTTTATAATTCTGTCACATACAATCACCGAA
GTCATTGGCTATATCTTTTACACTGAGGCACATTTAAAAACTAAATGGAATTAACTTACATCGC
CATGAAAACAAGTAGAGATCAAGAAAATACTAACCGCAGCAATTGATGGAGATGAATCCTCCCC
GGCAGGTGGATGGGTCACGTCAGCTCCAAAGATCATTGTAGGCATATCTGTTAACAGAGGAATT
CTCCTATGCAAAGCATCTTCCAGTACTGTATTTCGTCCACCAACCTATGTTCAAATTGTTAGTG
GAGTGAGCTACTCTCAAATAATAGCCAAATTGTTCGTAAAGCTAAAGAGACAGTGCCCACGTAA
TCCATGTACTGTCAAAGTAGTATATCCTACCTTAACATTGATTTTAAGTGCCAGGTTTCGGAGA
TATTGTGTTGGCGGACATTCTGAACATTCCTAGCTAAACAGCACTGAGTTATCACACCAAGTTC
AGTTTCACAAAGCCGCTTTATCCTTCCTGCAGATATTACAGATGTGAGACAACAGATGGTTAGC
AAAAACACTGCCAAAAAGAAAAGGTATACCTGAAAAATAATTATCATCAATTTGAGAAGTAATT
TATGTGCTTACCATAAAAGACAGTTGCATTTGCATCAGGTAGTACTATTACCAGTAACTCAAGT
TGTTGCCCGATCACACCTTGTTGAGAAAGAAATTCTGCAGATTGTCGATGTATATCTCTGACAG
CAGCATCTAAGTGATCTTGGCGTTCTTGCCTAATACGGACACATGGTTCCCCGGTAATTTGCTA
TGGAAAGGAGGATTATACAATTAAACAAACGTATACATGCCCGAAAGAGGACCATATAGAAAGA
TAAAATCTTTACCATGCCAATGCTATTGCACACACGAACCAACTCCTTGCAAAACGTCCTAACT
TCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCATGCCCAGTAATTGATGGATCCACCATTGA
GCATCCT
						
					

			
		

Sequences
Splice junction sequence	GAACCAACTCCTTGCAAAACGTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCA TGCCCAGTAATTGATGGATCCACCATTGAGCATCCTctgatcattccaccataaacaagtctgt tctgtgaatctttcacctctgtgaagagatcagctatgatctcttccctatggctttgcgaaga aaccgagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 656 Transcript exons: 27167482-27167624,27169564-27169701,27169866-27169939,27 170053-27170230,27170310-27170432 CTGATCATTCCACCATAAACAAGTCTGTTCTGTGAATCTTTCACCTCTGTGAAGAGATCAGCTA TGATCTCTTCCCTATGGCTTTGCGAAGAAACCGAGCATTTGTATTTTGACACTTCTGGCCAATC CATCGATGCAACAACCGCAGCAATTGATGGAGATGAATCCTCCCCGGCAGGTGGATGGGTCACG TCAGCTCCAAAGATCATTGTAGGCATATCTGTTAACAGAGGAATTCTCCTATGCAAAGCATCTT CCAGTACTGTATTTCGTCCACCAACATTCTGAACATTCCTAGCTAAACAGCACTGAGTTATCAC ACCAAGTTCAGTTTCACAAAGCCGCTTTATCCTTCCATAAAAGACAGTTGCATTTGCATCAGGT AGTACTATTACCAGTAACTCAAGTTGTTGCCCGATCACACCTTGTTGAGAAAGAAATTCTGCAG ATTGTCGATGTATATCTCTGACAGCAGCATCTAAGTGATCTTGGCGTTCTTGCCTAATACGGAC ACATGGTTCCCCGGTAATTTGCATGCCAATGCTATTGCACACACGAACCAACTCCTTGCAAAAC GTCCTAACTTCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCATGCCCAGTAATTGATGGATC CACCATTGAGCATCCT
Genomic sequence	CTGATCATTCCACCATAAACAAGTCTGTTCTGTGAATCTTTCACCTCTGTGAAGAGATCAGCTA TGATCTCTTCCCTATGGCTTTGCGAAGAAACCGAGCATTTGTATTTTGACACTTCTGGCCAATC CATCGATGCAACAACCTGCTGACAGTATTAACATAACTTGAAACATGAAGCATATTATGATAAG GAATCGTACGAGCAAGATAACTAGTAAGAGAGTACAGATTTCTCGTAAAGGAGTGAAATCACTC ATTGCTAGTATCTGTGAATTTTAAAAGAGGACAATACTGAAAGCAAGATATAGTAGCTACACCA ACACAAAAGAAGCATTCAATTTAAATCGAGATCTTTTACGGTGTTTGCATTCCAAAATAGGGAA AAATCCAATGCTCCTCAATGCCAGATACCATGTAAAAAGTATTTGAGTATTGGTTAGGTAAGTA TCAAGGGTAAAATAATAAATTTGCTAGTAGAGAGAAAAAGTATAATTGTCTCTAAATTTAAATC GGTACCGTGTAGGTTCCAATTAAGTCGTTTGCCTATTAATGGCCTATAGGTTCTCGTTTGCGTG GTTTTCTCTAGATTTACATTGTGTTCTTCAATGTTCTTGTTTGCGTGCACGTGCTTTCTTCTAG ATTTATATTTTGTTCCAAATAACACGTTTAACGTTTATTGGCACAAAAGTTCTGGTTTGTGCGG TTTTATCTTTTTATGTTTTGTTCTCCTCAACCATGTTGGCGCTTCTCTCTCTGTTTAATTCTGA TGAACGAGTTCTAACCCAAGAATAAGAACGGGACAGATGGGGAAGAAGAAAAAAAGATCCAATT TTAGAGCTTTTACGGTGTTTGCGAGATACTTAGAAGTATTGAGAGGTGGAGTAATATAAGCCGT TGATCAAGAGAGGGGCAAGGTATGGAAAAAGAATTTTGTAATCAATGGCAGTGAAGTAATTAGT TCAATATGAACAACGTAAATCGGGCATTAATTTAGTTATTGAATAGATCTCACGAAAAAAGATC AGATTGGATCTTTTTTTTCTTCTTCCCCATCGGTCCTATTCTTATTCTTGGGTTAGAACTTGTT CATCAAAATTAAACAGAGCGAGAAGCGCCCACATGGTTGAGGATTCAATATGAGATCGGGTAAG ATCTACTTTACATAGTTGATTAGTTATGTATGCAGTTCACATATTCCATCGTTTATCATGTTCA AATGGAAGCAAGCATGATGAATATTTTATCTACAGTTCATGTTTTCGAGGGATATATCGATAAA ATATTTAACTTAAATTGATTACCTTCGGTGATATTTTAACCGGTCAGGTTCTTGAAACACATTA AAAATCTCTTCTTGAAACAAAATATAAATCTCTAAAAGAATTAAATGAATTAGTTTTGCCATGT TCTTTGGAATAAAACATAAAAAGATAAAACCGCGCAAACCAGAACTTTTGCCCCAATAAACGTG TTATTTGGAATAAAATATAAATCTAGAAGAAAACACGTGCACGCAAACAAGAACATTGAAGAAC ACAATGTAAATCTAGAGAAAACCACGCAAAAGTTAACCTATAGGCCATTAATAGGCAAACGACT TAATTGGTACCTACACGGTACCTATTTAAATTGAGAGACAATTATACCTTGTTCTCTCTACTAG CAAATTTATTATTTTACCCTTGATACCTAAGTACCTAACCAATACTTAAATACTTTTTACATGG TACCTGTCATTAAGGAGCATTGGATTTTTACCTATCTTGAAATGCAAACACCATAAAAAATCTC GATTTTGCTCCGGTCCAGCAAAAAGTATCTCGAGGTACCGCCGTACCGGTGCCTCACGGTACCA AATCGTCCAGTACCTCGAGATACTTTTTCTCGACCGGAGCAAATCTCTTCAATTTATATTCCCC AGCCCGCAATTGACGTATAACATAAACACTTCTGTTTATAATTCTGTCACATACAATCACCGAA GTCATTGGCTATATCTTTTACACTGAGGCACATTTAAAAACTAAATGGAATTAACTTACATCGC CATGAAAACAAGTAGAGATCAAGAAAATACTAACCGCAGCAATTGATGGAGATGAATCCTCCCC GGCAGGTGGATGGGTCACGTCAGCTCCAAAGATCATTGTAGGCATATCTGTTAACAGAGGAATT CTCCTATGCAAAGCATCTTCCAGTACTGTATTTCGTCCACCAACCTATGTTCAAATTGTTAGTG GAGTGAGCTACTCTCAAATAATAGCCAAATTGTTCGTAAAGCTAAAGAGACAGTGCCCACGTAA TCCATGTACTGTCAAAGTAGTATATCCTACCTTAACATTGATTTTAAGTGCCAGGTTTCGGAGA TATTGTGTTGGCGGACATTCTGAACATTCCTAGCTAAACAGCACTGAGTTATCACACCAAGTTC AGTTTCACAAAGCCGCTTTATCCTTCCTGCAGATATTACAGATGTGAGACAACAGATGGTTAGC AAAAACACTGCCAAAAAGAAAAGGTATACCTGAAAAATAATTATCATCAATTTGAGAAGTAATT TATGTGCTTACCATAAAAGACAGTTGCATTTGCATCAGGTAGTACTATTACCAGTAACTCAAGT TGTTGCCCGATCACACCTTGTTGAGAAAGAAATTCTGCAGATTGTCGATGTATATCTCTGACAG CAGCATCTAAGTGATCTTGGCGTTCTTGCCTAATACGGACACATGGTTCCCCGGTAATTTGCTA TGGAAAGGAGGATTATACAATTAAACAAACGTATACATGCCCGAAAGAGGACCATATAGAAAGA TAAAATCTTTACCATGCCAATGCTATTGCACACACGAACCAACTCCTTGCAAAACGTCCTAACT TCAGCCAGACGTACGCAGGAAGCAAAAGTCAAGCATGCCCAGTAATTGATGGATCCACCATTGA GCATCCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.212486657

Conservation Information
Conserved circRNAs	NA
PMCS	0.212486657

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27170431-27170392(-)
						
						Potential amino acid sequence
						
							MLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQITGEPCVRIRQERQDHLDAAVRD
IHRQSAEFLSQQGVIGQQLELLVIVLPDANATVFYGRIKRLCETELGVITQCCLARNVQNVGGR
NTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSPSIAAVVASMDWPEVSKYKCSVSSQSH
REEIIADLFTEVKDSQNRLVYGGMIRGCSMVDPSITGHA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27170431-27170392(-)
Potential amino acid sequence	MLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQITGEPCVRIRQERQDHLDAAVRD IHRQSAEFLSQQGVIGQQLELLVIVLPDANATVFYGRIKRLCETELGVITQCCLARNVQNVGGR NTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSPSIAAVVASMDWPEVSKYKCSVSSQSH REEIIADLFTEVKDSQNRLVYGGMIRGCSMVDPSITGHA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0682600_circ_g.5

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