Detail information of Os03g0682600_circ_g.4


General Information
CircRNA Name Os03g0682600_circ_g.4
ID in PlantcircBase osa_circ_020993
Alias NA
Organism Oryza sativa
Position chr3: 27166931-27171176  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0682600
Parent gene annotation Protein argonaute 11. (Os03t0682600-00)
Parent gene strand -
Alternative splicing Os03g0682600_circ_igg.1 Os03g0682600_circ_g.1 Os03g0682600_circ_g.2 Os03g0682600_circ_g.3 Os03g0682600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0682600-00:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGAGTACACGAGCATCGACTAAGGCAAGTTGGTTTGTCACCCCGATGCCAAATTCTCTGGC
ATGATAATCATTGCCATAGTTGTTTTCATTAGCAATcaggtaagatgtttctgcttcgatccat
ctgatccctcgcgtgatgatcttcaggaaaaagacgggtgtgatgcctcttttgcaccacaaca
aaggtaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGTAAGATGTTTCTGCTTCGATCCATCTGATCCCTCGCGTGATGATCTTCAGGAAAAAGACG
GGTGTGATGCCTCTTTTGCACCACAACAAAGGTAACTGGAGGGAGGTAGCCCTCCTCTATGCTA
GCACAAGCCTGCAGGCAGAAGCATACATAGACTAAGAAGATCACAAAACAACACAAATGCAAAC
TGCAAGCACACAAAACATAGAAACATGAGAGATAATGAGGCTGAAAAGGACCTTCCGAATTGCA
TCCATTTCACTAAGCAGAACTTGGCTAAACTGGCCTTCACTAACACCGTCTCTGCATGCCAAGA
AAATTGAGTTCTCGTAGCAGATAAAAAAGGAGAATTAGAATAACATAGCACATATTATTTGCTT
CACAAACCGATAAAATATTATCCTTCCAGGTTTGTAGCTGCCATTTGCTTTACGGAAAGACTCT
ATCAACTCTCTGAAACAACAAAGTTTTTTAATGAAAACATGCGCGAGCAAGGTTATTGCAGCAA
AAGAATAATTAAATTAGACACTGTCCATGCCAAAAGTACCTGATCATTCCACCATAAACAAGTC
TGTTCTGTGAATCTTTCACCTCTGTGAAGAGATCAGCTATGATCTCTTCCCTATGGCTTTGCGA
AGAAACCGAGCATTTGTATTTTGACACTTCTGGCCAATCCATCGATGCAACAACCTGCTGACAG
TATTAACATAACTTGAAACATGAAGCATATTATGATAAGGAATCGTACGAGCAAGATAACTAGT
AAGAGAGTACAGATTTCTCGTAAAGGAGTGAAATCACTCATTGCTAGTATCTGTGAATTTTAAA
AGAGGACAATACTGAAAGCAAGATATAGTAGCTACACCAACACAAAAGAAGCATTCAATTTAAA
TCGAGATCTTTTACGGTGTTTGCATTCCAAAATAGGGAAAAATCCAATGCTCCTCAATGCCAGA
TACCATGTAAAAAGTATTTGAGTATTGGTTAGGTAAGTATCAAGGGTAAAATAATAAATTTGCT
AGTAGAGAGAAAAAGTATAATTGTCTCTAAATTTAAATCGGTACCGTGTAGGTTCCAATTAAGT
CGTTTGCCTATTAATGGCCTATAGGTTCTCGTTTGCGTGGTTTTCTCTAGATTTACATTGTGTT
CTTCAATGTTCTTGTTTGCGTGCACGTGCTTTCTTCTAGATTTATATTTTGTTCCAAATAACAC
GTTTAACGTTTATTGGCACAAAAGTTCTGGTTTGTGCGGTTTTATCTTTTTATGTTTTGTTCTC
CTCAACCATGTTGGCGCTTCTCTCTCTGTTTAATTCTGATGAACGAGTTCTAACCCAAGAATAA
GAACGGGACAGATGGGGAAGAAGAAAAAAAGATCCAATTTTAGAGCTTTTACGGTGTTTGCGAG
ATACTTAGAAGTATTGAGAGGTGGAGTAATATAAGCCGTTGATCAAGAGAGGGGCAAGGTATGG
AAAAAGAATTTTGTAATCAATGGCAGTGAAGTAATTAGTTCAATATGAACAACGTAAATCGGGC
ATTAATTTAGTTATTGAATAGATCTCACGAAAAAAGATCAGATTGGATCTTTTTTTTCTTCTTC
CCCATCGGTCCTATTCTTATTCTTGGGTTAGAACTTGTTCATCAAAATTAAACAGAGCGAGAAG
CGCCCACATGGTTGAGGATTCAATATGAGATCGGGTAAGATCTACTTTACATAGTTGATTAGTT
ATGTATGCAGTTCACATATTCCATCGTTTATCATGTTCAAATGGAAGCAAGCATGATGAATATT
TTATCTACAGTTCATGTTTTCGAGGGATATATCGATAAAATATTTAACTTAAATTGATTACCTT
CGGTGATATTTTAACCGGTCAGGTTCTTGAAACACATTAAAAATCTCTTCTTGAAACAAAATAT
AAATCTCTAAAAGAATTAAATGAATTAGTTTTGCCATGTTCTTTGGAATAAAACATAAAAAGAT
AAAACCGCGCAAACCAGAACTTTTGCCCCAATAAACGTGTTATTTGGAATAAAATATAAATCTA
GAAGAAAACACGTGCACGCAAACAAGAACATTGAAGAACACAATGTAAATCTAGAGAAAACCAC
GCAAAAGTTAACCTATAGGCCATTAATAGGCAAACGACTTAATTGGTACCTACACGGTACCTAT
TTAAATTGAGAGACAATTATACCTTGTTCTCTCTACTAGCAAATTTATTATTTTACCCTTGATA
CCTAAGTACCTAACCAATACTTAAATACTTTTTACATGGTACCTGTCATTAAGGAGCATTGGAT
TTTTACCTATCTTGAAATGCAAACACCATAAAAAATCTCGATTTTGCTCCGGTCCAGCAAAAAG
TATCTCGAGGTACCGCCGTACCGGTGCCTCACGGTACCAAATCGTCCAGTACCTCGAGATACTT
TTTCTCGACCGGAGCAAATCTCTTCAATTTATATTCCCCAGCCCGCAATTGACGTATAACATAA
ACACTTCTGTTTATAATTCTGTCACATACAATCACCGAAGTCATTGGCTATATCTTTTACACTG
AGGCACATTTAAAAACTAAATGGAATTAACTTACATCGCCATGAAAACAAGTAGAGATCAAGAA
AATACTAACCGCAGCAATTGATGGAGATGAATCCTCCCCGGCAGGTGGATGGGTCACGTCAGCT
CCAAAGATCATTGTAGGCATATCTGTTAACAGAGGAATTCTCCTATGCAAAGCATCTTCCAGTA
CTGTATTTCGTCCACCAACCTATGTTCAAATTGTTAGTGGAGTGAGCTACTCTCAAATAATAGC
CAAATTGTTCGTAAAGCTAAAGAGACAGTGCCCACGTAATCCATGTACTGTCAAAGTAGTATAT
CCTACCTTAACATTGATTTTAAGTGCCAGGTTTCGGAGATATTGTGTTGGCGGACATTCTGAAC
ATTCCTAGCTAAACAGCACTGAGTTATCACACCAAGTTCAGTTTCACAAAGCCGCTTTATCCTT
CCTGCAGATATTACAGATGTGAGACAACAGATGGTTAGCAAAAACACTGCCAAAAAGAAAAGGT
ATACCTGAAAAATAATTATCATCAATTTGAGAAGTAATTTATGTGCTTACCATAAAAGACAGTT
GCATTTGCATCAGGTAGTACTATTACCAGTAACTCAAGTTGTTGCCCGATCACACCTTGTTGAG
AAAGAAATTCTGCAGATTGTCGATGTATATCTCTGACAGCAGCATCTAAGTGATCTTGGCGTTC
TTGCCTAATACGGACACATGGTTCCCCGGTAATTTGCTATGGAAAGGAGGATTATACAATTAAA
CAAACGTATACATGCCCGAAAGAGGACCATATAGAAAGATAAAATCTTTACCATGCCAATGCTA
TTGCACACACGAACCAACTCCTTGCAAAACGTCCTAACTTCAGCCAGACGTACGCAGGAAGCAA
AAGTCAAGCATGCCCAGTAATTGATGGATCCACCATTGAGCATCCTCTGAAATATCCACAAACA
AAAGAGAATAATTGTTCTCATATCCATTCAAGCAACTTACAGTAGGTTAAAATAATATGATTTA
TATAAACAAAAATATAGAAATATTTTTAAAAAATATATAACACTGTTAATTTTTCCAGAAAACA
AGAATTGATCACAGAAGAAGTGGAAACATTACCATGTTAACCTTTAATCACTAGTACATACAAG
TAATTAGATTTGTCACATGAAAAGTAGAATTATCATAAAAATACTTCTCATTGTATTTTTTTTA
TTAAGAAACATGCGAGATCATATAATTTAGAAAGATAATGGACAGGATTGTGTGTGAAACACAT
CATCAATGTTCAAAACAGAAGGTATATCACATTATCCTCTCCCAAAATTGAAAATAGATGTGCA
ATTACATTCTTCTGGGAAAACATAAATAATTGAAATTTACCACAATTTGACAGTCTAGAATATA
GCTCAAAATGAAAAGAATATACCTTGTTATTCATGTTCCACTGACCAATGGAAGGATTACATAC
TTTCTCTTGTCCAGAGTCATGGTACTTAAGCTAAAAGATAGAAATAGGAAATCCAATGCATAAA
CAAACGATAATGATATAATTTACCCAAAATAAATATATTTACCATTGGAGCAGGGAGTACACGA
GCATCGACTAAGGCAAGTTGGTTTGTCACCCCGATGCCAAATTCTCTGGCATGATAATCATTGC
CATAGTTGTTTTCATTAGCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.0972686
Functional Information
Coding potential Y
Potential coding position 27171142-27167026(+)
27171073-27171171(-)
Potential amino acid sequence MIIIAIVVFISNQVRCFCFDPSDPSRDDLQEKDGCDASFAPQQR*(+)
MLKYHDSGQEKVCNPSIGQWNMNNKRMLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSI
GMQITGEPCVRIRQERQDHLDAAVRDIHRQSAEFLSQQGVIGQQLELLVIVLPDANATVFYGRI
KRLCETELGVITQCCLARNVQNVGGRNTVLEDALHRRIPLLTDMPTMIFGADVTHPPAGEDSSP
SIAAVVASMDWPEVSKYKCSVSSQSHREEIIADLFTEVKDSQNRLVYGGMIRELIESFRKANGS
YKPGRIIFYRDGVSEGQFSQVLLSEMDAIRKACASIEEGYLPPVTFVVVQKRHHTRLFPEDHHA
RDQMDRSRNILPDC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017