Detail information of Os02g0220500_circ_ag.3


General Information
CircRNA Name Os02g0220500_circ_ag.3
ID in PlantcircBase osa_circ_013895
Alias NA
Organism Oryza sativa
Position chr2: 6718573-6723542  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0220500_circ_ag.1 Os02g0220500_circ_ag.2 Os02g0220500_circ_ag.4 Os02g0220500_circ_ag.5 Os02g0220500_circ_ag.6 Os02g0220500_circ_ag.7
Support reads 12
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCCTGATG
GTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGttacccgctcgaaggctgacaacccact
ctatgggtcttcactgattgaatatgtgagtggtcttccatagatatttaagatcattcttgat
tattttac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTACCCGCTCGAAGGCTGACAACCCACTCTATGGGTCTTCACTGATTGAATATGTGAGTGGTCT
TCCATAGATATTTAAGATCATTCTTGATTATTTTACGAGCTTCTAGAATTGTATGTTTCTTCCA
GGCCCACATCGAGCAGTGGAATGACTTTTCGGCCACAGAGGTTGATGCTAATATTGGAAAATGG
CTCTACCCACGGCTAGGAATTGCTCCCTATGTTGCTGTGGTAAGTATGGTCAAGTGGGTGTCAT
AGTGTTTTCCTTGTGTCAGCAATTTGTTGTCTAATCTTATTTCTGCCCAACAGAGTGAGGAAGC
AGCTATTGCTGCTTTGAAGAGATCATTGGGTGCCCTCAACACACACCTTGCATCAAACACATAC
CTTGTTGGCCATTCGGTGACTCTTGCTGATATTGTGATGACCTGTAACCTCTACATGGGCTTTG
CTCGGATCATGACCAAGAGTTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCAT
GGTTAATCAGCCAAACTTTAAGAAAGTCTTGGGTGATGTGAAGCAGGCAGAGTCTGTCCCACCA
GTTCAAAAGAAGGCTCCACCACCAAAGGAGCAGAAGCCAAAGGAAGCCAAGAAAGAGGCTCCAA
AACCTAAGGCAGTTGAGAAACCAGAGGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAACCC
TCTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACA
AAAACAAATTTCCGTGAGGTTGCTATCAAGGGTAAGTTTCTTTTGGGAATCTAGTAGTCACTAA
AAGGTTTCCACGTAGAAAAGTATAGTTTCTTTCGGGAATCTAGTAGTCACTAAAAAGGTTTCCA
CAGAGAAAAGTTTACTACATTGCTGTGAGTACACTAGAAAGATATGAGTACAAATTGGCTTACA
AATTATAACAGCTACTAAAGAGTCAATGCAAATTTGTTTGTTGACCTGTCAACTGTTAGCAAGT
TATATCTCTTTGATTACCATTATTTGTCATCTGCTCCCAACTTCTGTTGTGTATGAAGTTCTGT
GAATTGAACTCAACATGTCTTCTCACTTATTGCAGGTTTCTGGGATATGTATGACCCAGAAGGT
TACTCCCTGTGGTTTTGTGACTACAAATACAATGACGAGAACACTGTGTCCTTCGTGACCATGA
ACAAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCAAATATGCTTTCGGGAAGATGCT
TGTGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTGGCTCTTCCGTGGCCCCGAGATC
CCCAAGTTCGTCATGGATGAAGTCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCT
CAGATGAGGCCCAGAAGGAGCGCGTCAGCGCCATGATTGAGGACCTGGAGCCATTTGAGGGCGA
GTCGTTGCTGGATGCGAAATGCTTCAAGTGAGGCGTCGTTGGAGCAAGGATACCGTGGAAAATG
AGCTATTTAGGTTTTGGATTTACCCTTCTACAATAGTTCATGATTATGAAAAAAAAAATACTAT
CACCATGTGGCTATATTAGTCAATATTGAGTGTGCTGGTCTTTTCTTTTTGTACTGTTTGCTAG
AGTTTTGGCCCTTTTTAACCTTGTAGTTAAGTTGTTAAGACACTTATCCATCGAATCATCGTCA
GAAACACACCATTCGAATCTGCTGTTGCTCATGTGTTAAACTTGCCATTCTGATAATGTTTTGG
AAATAGGCAACAAAACGAGTTATGGTGCTGGGTTATTTTATGTATTTTATTCTGTTGTTCATGT
TTGTTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAGCGCTGGGCACGCAGACGAAGGCCATGTTC
GTTTCTATTGAGATTTTCTTGATTATCTGGTTTGGTGATGGCTATTTGAGGGTATATAAATGAA
TGAATGAACGAATTACTATTAATTTAAAATTTTGCTTTAGAAAAATATTTCCAAGAAACTTCTA
TTATATAGAAATTTTTTACATGAAAAGCATAGCTTGGTAAGCCGGATAATAATCTCCTGAATCA
AAAATGGGATCTACAACGCATGGATCAGAGATTTGCGTTTTGTCAATGTGTCAACTTGCCTAAG
CATTTGCGGAGTAAATTTAGTGACGTTAAAGAAAGAAAGGGAAGGAAGGAGAAACAACTACGGA
TGACAACGGTTTAGGGTTTAGAGTTAATGTGGAAGAAATAGAGGGAATGAAGGAGAAATATCGT
TGCTATGCATGACAACGGCTCCTCAGAGTCAAGTGAAAGAAAGAGAGGGACGCATGACATGACA
ACGGCTCCTCAGAGTCACGTGAAAGAAAGAGATGGAAGGAAGGAAAAACATCGTTGATACGCAT
GACAACGGCTCAGAGTCGACTCTTAGCATTCATTAACGAAAAGTTTGTTGCATGAGAGTGGAGA
AAAATGAAAGAAGTATAATAAAAATTTATTTATACATTAATGGTTTAGAAAACTTATTGTCTTT
ATTACTTTAGTACTTCCTCCGTTTACTTTCTAACATTGCTAATATTCATATATATGTTAATGAA
TCTAAACATATATGTGTGCCTAGATTCACTAACATCTATATGAATGTGAAGAATGCTAGAAAGT
CTTATAACCTGAAACGGAGGTAGTAGGATATAGTCTCTAGTAATATTAATTAATATAAAGAGCT
CATATTAGACTCTACCTTTATACATGCCTTGAAATTAACTCACAGCATCACCACCATGCGAACA
TTAAATCCTCCTTACTCCATTTCGTATTCTATAATACTATCTCCTTCCCCTTAATAACGTTGGT
CCTTACTCCACTCAGTATTCTGTAATACTAATCTCCTTCCCCTTAATAACTTTGGTTAGTTTAA
TTTTGAGTAAATTTTAGGGTGTTTGGTTGTAGTCACAGTTGTGGCAAGATTCTCTTCCAATAAA
CGAGTCATATACGTTATTGACTCAAAAATGTGTTGCAAGATTTTCTTAGGCTTGCTAAAGTGTG
ACCAAGAATTTGATCGCCTCACTTAGACAAGTGTGGCAATACTTTTGTATGTAGTTTTATGATA
AATTAACCTATATATATATAATTTTCTAAAATTTATTTAATTTTTTTATGGGAAAGAAATGGAT
TTAATTTTTTTTAGAAAAAATGCCCAAGGCCCGTTTCGATCCAACGGGCTCGACTGGAAGGGGC
CAGAGTGCCAGACGAATGCCCGCCTACGGAGTGGTTGGATCTGCTCTGCGCCGTCCGATCTGTC
GCAAGGCTTACTCATCGGACGGCCGAGATCACCCGCGCGCAACCCTAGGCGAGATCGTAAGTAG
AATCGGCTGCGTCGAATCCCTCCACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCG
TCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCGTAAGATCTCCCCGATTCGCTACA
ACTAACTAGTGTGCTTGCGCCATTGTTGCGTACTGTTGATTTTGCGGATTTTTTTTTAAATTTT
TTTGGATTTTTGTTTCCTCATGATGTGCAGATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCG
GCCCCGTCGAGATGGCGCTCGTAAGTGATTCTTGATCTAACCTCGTTTGCTCGTGTTCTTTAGT
TGATTTAGTGGAGAAGCTTGGCATGATGCGGTGGGGTGTAGTTTTTTTTTTTTCATTTTCAAAT
TGTAGCATCTGTGGATTGCTGTATGAGTCTTCTGTAAAGCATATCGTTTTTTTCTGCACGATCA
GGGTTGATTTGGTGCGCATTTCTACCCAGCATTTAGGGAGGGTTTTGGTAGGGTGGTGACAGTT
TAGGTGTCACGGATTTTATTTAGATCGGTGGACAATGTTCGGTCTATGTCTAGCATCTCTTATT
TACTTAATGTTGTCTTGCAAGCTCGTTGAAATGCAGATTTCTGGTTTTTTTTTTTACTTTGTTA
CTTTCTGGTTCAAATGCTGGCGGATCAAGTGAATATTAAATAATTTGTGCAGTGAGGAAGCAAG
GACCTGCCTTCGAAATTTTTCTAGTCTATATTTCTGATTATTTGATCCCAAGTGTTAAAGATTG
TTGCCAAGGTTTTCCAATAGTTAGCCTTTCTTATATACATTTGATGATGTAAGACCAAATTCAA
ATGCATACAAATGAAAGCCTGATCACATGACAGTTTGTTGACAATATATACATTATCCTGTAGA
GATTCGCACAGGGCTCTGCTTTCCTAGAATGCTTACAGCTTCCTGTTTGATGCAAATGGGATTA
TTTGGAGTTTCGGAAATGAAGTCTTATTCGCTTTCTGAATAGCCGATGAGCATGTAGACATGTC
TCATGCAGACATTATAGCTCAGCACTTGTGCACATAATTATATAATATGTATGTATTGACCATC
ACTCTGTAGAACATTGAATGGCTAAAGTCACTGTGTAATATGTGCTGCTTGATCTATGAATTTG
TCCCGTTGTTTGTATATTTTTTGTTTATCATGTTTGTGTATCCATCCTTATGGACATGCTAGTC
AAACTGTCCTTGTAGTGTTGTCATGTCATGCACTTCCCTAACCTATTTTCACGCTCAACTTTGT
AACTTGCATTGGTGTAGGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCAT
TGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAAC
AAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGGTTTGAGCAAAACCACCTCTGAATT
TTGGTACATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTC
CTGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATG
Conservation Information
Conserved circRNAs osi_circ_012721
PMCS 0.660563979
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017