Detail information of Os04g0429850_circ_g.5


General Information
CircRNA Name Os04g0429850_circ_g.5
ID in PlantcircBase osa_circ_023842
Alias NA
Organism Oryza sativa
Position chr4: 21316746-21316849  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0429850
Parent gene annotation Hypothetical protein. (Os04t0429850-00)
Parent gene strand -
Alternative splicing Os04g0429850_circ_g.1 Os04g0429850_circ_g.2 Os04g0429850_circ_g.3 Os04g0429850_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGTGTGCTCCTGTGGACTACAGGGCTTGTTTTTATTTCCAATCCTTCTAAgtaataaaattg
ccaagaacttcattgtggcatttatgttatctggcgcatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 104
Transcript exons: 21316746-21316849
GTAATAAAATTGCCAAGAACTTCATTGTGGCATTTATGTTATCTGGCGCATTTGTGTGTGCTCC
TGTGGACTACAGGGCTTGTTTTTATTTCCAATCCTTCTAA

Genomic sequence GTAATAAAATTGCCAAGAACTTCATTGTGGCATTTATGTTATCTGGCGCATTTGTGTGTGCTCC
TGTGGACTACAGGGCTTGTTTTTATTTCCAATCCTTCTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.338878205
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017