Detail information of Os04g0429850_circ_g.4


General Information
CircRNA Name Os04g0429850_circ_g.4
ID in PlantcircBase osa_circ_023841
Alias NA
Organism Oryza sativa
Position chr4: 21315200-21315301  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os04g0429850
Parent gene annotation Hypothetical protein. (Os04t0429850-00)
Parent gene strand -
Alternative splicing Os04g0429850_circ_g.1 Os04g0429850_circ_g.2 Os04g0429850_circ_g.3 Os04g0429850_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0429800-01:1
Os04t0429850-00:1
Os04t0429800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGagccttgatgaga
tcccagacaagtccctcaagagcaaagatggttcaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATT
TTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.423933333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017