Detail information of Os04g0429850_circ_g.1


General Information
CircRNA Name Os04g0429850_circ_g.1
ID in PlantcircBase osa_circ_023839
Alias Os_ciR3388
Organism Oryza sativa
Position chr4: 21313321-21315301  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method find_circ
Parent gene Os04g0429850
Parent gene annotation Hypothetical protein. (Os04t0429850-00)
Parent gene strand -
Alternative splicing Os04g0429850_circ_g.2 Os04g0429850_circ_g.3 Os04g0429850_circ_g.4 Os04g0429850_circ_g.5
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0429800-01:6
Os04t0429850-00:6
Os04t0429800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTT
GTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGgtttgatctgtacttcaggaaaaatcca
tttggtggagaattcactgtttttgctggtcttgaagaatgcattaagttcattgcaaatttta
agttcaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 640
Transcript exons: 21313321-21313465,21313689-21313808,21313905-21314039,21
314147-21314208,21314449-21314524,21315200-21315301
GTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAA
GAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAG
TCATGCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGA
AGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGAGGGT
CCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGG
TAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGG
TTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGT
TTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATT
CTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAA
AGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAG

Genomic sequence GTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAA
GAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAG
TCATGCCAATGTGTGAGGTAAGCTGTTACATAAAATTATCTTTCTGTCTTAAAGTGGCATATGG
TTCTGATATAAGCTGCTATACTATCTAAAATCCTATTAATTTGCCATATTTATAGAAAGGCTTG
TTAGCATAGTCTACAAAAACATTGCCATTTCAAATGTCAGATCTTTAATGTATCACTTGTTAGT
TGTTTGCCATGATAAATGTTCATTTACTGATGTGATATGCGATTCTAGGATGCGTTCTTTGATT
ATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTT
TCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTAAGTACAGAGTCCCTTAACAAT
TGTTGTACCTAAAACATGTTGATCATGAACTTCTGGTTTGAACATTAACCAGAACTTTGCATGG
TTCATCAGGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGT
AACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGT
TTGAGACGAGCACAGGTGTGATCTTGAACCATCCCATTTACACTGCCATTTTGATTTTTGTATG
GTACACAAGTATTTGGTATTTCTGTGCATGAAACATAGCTGTGGATTTGTATTGACAGGGGCCT
GACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGGTGGTAGT
TCTTCCATGGTTCCATTTACAAATTTACATATCTTTAAAAAATTTATAAATTCTGCATATCCAT
GTTACCTCTTTGCAACTATACTTTCACAAGAAGTATATTTTGAATCATGCTTGCCTTGCTTAGT
CCTTTTTCCCTCCTTAACAAAATTTTTGTTTTTCGTCCTCAGAATGTGAAAAACTACTGTTGTA
AACCATTTATTTAATTCATCGTCCTCTCATTATTTTGCAGTAATGTTTTGGCTGGAAATCTGTT
TGGCATACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGGTCAGTAAATAC
CTTTTTGTGTCACCGCAAAAGAAAAATTCTTTTTGTCAACAAACATAATCCAGTATTTTCTCCT
CTATCATTGGAGCACTTTATGTCTCTATTGAAGTTTGTATGCTGTGGTTGCATTGACTAAACAC
AACTTTTAGTTCTTCTCCACATCAGTAGATGAGCCCAAATGTTGTGTCAGTTTCAAGTTGAAAG
ATGTGGTTTTTCTTCACTCAAATTATCTAGTTGACAGTTGAGACTGCCTAGTGTTACAAAATGT
TGCAGAACACAGTTTTGTTGTTGTGGCAATTGAATCCAGATTATAATCGATGAAAAAAAAAGGC
ACCAGAGTCTATGTTTTGTTGAATAACCTGCACTTGCTTTGTTTTTTATCCTTTGTTAGCCATG
CTAGTTATTTTTATGCTCACTCCTAGCTTGCTGATCTACTGAGTTTTTCCTGTCTTTGCTTGAT
ACTTATCTGAGGTACATAGATAATCATTTTATCAACATAGCAACTATTTTTCTTTCTGCCATTA
ACGTGTGATGTGCATGACAGTTTGTATTATCCCTTGTATTTGCAATAATAGAGAGTTATATTAG
ATATCATACATTCTGGAGACTTTTTCTATTTTTATACCACTTGTTGCTAGTTGTTGCCTGAGCT
AACAATCTTTTCAACCCTTTCAGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGA
TGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.234240081
Functional Information
Coding potential Y
Potential coding position 21313452-21313323(+)
21313454-21315247(-)
Potential amino acid sequence MPMCEDAFFDYLRKTDCSDVEVYSIPEGSVVFPKVPLMRVEGPVAVVQLLETPFVNLINYASLV
TTNAARHRHVAGKSKVLLEFGLRRAQGPDGAISASKYCFMGGFDATSNVLAGNLFGIPLRGTHS
HAYVSSYMSLDEIPDKSLKSKDGSRVCKDFVSLVKEWLQKIQV*(+)
MTDCRNKMSSSVNLKFAMNLMHSSRPAKTVNSPPNGFFLKYRSNLNLLKPLFYQTNKIFADS*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015