Detail information of Os04g0429850_circ_g.3


General Information
CircRNA Name Os04g0429850_circ_g.3
ID in PlantcircBase osa_circ_041760
Alias NA
Organism Oryza sativa
Position chr4: 21313792-21314006  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0429800
Parent gene annotation Similar to Nicotinate phosphoribosyltransferase-like protein. (O
s04t0429800-01)
Parent gene strand +
Alternative splicing Os04g0429850_circ_g.1 Os04g0429850_circ_g.2 Os04g0429850_circ_g.4 Os04g0429850_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0429850-00:2
Os04t0429800-01:2
Os04t0429850-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAAT
GCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAttgagggtccagttgctgtaagtacaga
gtcccttaacaattgttgtacctaaaacatgttgatcatgaacttctggtttgaacattaacca
gaactttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 119
Transcript exons: 21313792-21313808,21313905-21314006
TTGAGGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGC
CTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAA

Genomic sequence TTGAGGGTCCAGTTGCTGTAAGTACAGAGTCCCTTAACAATTGTTGTACCTAAAACATGTTGAT
CATGAACTTCTGGTTTGAACATTAACCAGAACTTTGCATGGTTCATCAGGTGGTCCAACTACTT
GAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCGAGACACC
GCCATGTTGCTGGAAAATCAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.26915938
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study