Detail information of 2_circ_igg.3


General Information
CircRNA Name 2_circ_igg.3
ID in PlantcircBase ath_circ_013041
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3268887-3269109  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_igg.2 AT2G07743_circ_g.1 AT2G07743_circ_g.2 2_circ_igg.4 2_circ_igg.5 2_circ_igg.6 2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.16 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 2_circ_igg.23 AT2G07687_circ_g.1 2_circ_ig.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GG-CG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGAAGCGCTATAATGACCACTACGCGCGTTTCATTCTCTTCGATCTTAGTCGTAAGCTTCC
TATTTTGCTTTCATTTTCATTCCTTTCGTTTGAAAGttcctcggacgctaataacgaagcaaac
tacagaatctcaaatttatgaaaaatatggttcgactgttgttgcccctgctcggagctttggc
aggtagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCCTCGGACGCTAATAACGAAGCAAACTACAGAATCTCAAATTTATGAAAAATATGGTTCGAC
TGTTGTTGCCCCTGCTCGGAGCTTTGGCAGGTAGTTTTTGCGCCCGTTTTCTAGGATCAGAAGG
AAGCGCTATAATGACCACTACGCGCGTTTCATTCTCTTCGATCTTAGTCGTAAGCTTCCTATTT
TGCTTTCATTTTCATTCCTTTCGTTTGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.244545927
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017