Detail information of AT2G07687_circ_g.1


General Information
CircRNA Name AT2G07687_circ_g.1
ID in PlantcircBase ath_circ_013062
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3312277-3312372  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI
Parent gene AT2G07687
Parent gene annotation Cytochrome c oxidase, subunit III
Parent gene strand -
Alternative splicing 2_circ_igg.2 AT2G07743_circ_g.1 AT2G07743_circ_g.2 2_circ_igg.3 2_circ_igg.4 2_circ_igg.5 2_circ_igg.6 2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.16 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 2_circ_igg.23 2_circ_ig.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G07687.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGAAGAATGAGAAGAAGCCCAAAAAAAAGCAAAAAAGAACATAACctcaatcccttttggg
ggccaaatacctccgatctctaccgcaggtgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATCCCTTTTGGGGGCCAAATACCTCCGATCTCTACCGCAGGTGCCAAAGAAGAATGAGAA
GAAGCCCAAAAAAAAGCAAAAAAGAACATAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.814280998
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017