Detail information of 2_circ_igg.23


General Information
CircRNA Name 2_circ_igg.23
ID in PlantcircBase ath_circ_013061
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3280937-3281334  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_igg.2 AT2G07743_circ_g.1 AT2G07743_circ_g.2 2_circ_igg.3 2_circ_igg.4 2_circ_igg.5 2_circ_igg.6 2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.16 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 AT2G07687_circ_g.1 2_circ_ig.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AA-TG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACATCACCATATGGATCAACTGGTA
ATAATGAAGTATTAAGCATACTTCGTAGTAGGTTTAattccgttgctcttgttaggtcgaaaat
tagactgaactcaaataattgaacagtaatctgaatttgatctctcgccagaattgatttaacc
aatagaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCCGTTGCTCTTGTTAGGTCGAAAATTAGACTGAACTCAAATAATTGAACAGTAATCTGAAT
TTGATCTCTCGCCAGAATTGATTTAACCAATAGACATATATATTATCTTTCTTACTTCTGACCA
GTGGTGCTCTATACATATTGGTGAATTTAGATATGAAAATGAAATCTCCTTTATTTAGAGGACC
ACTGGTCAACAGTTCCACAGAAAATCCAATTCATATCCTAACGCGAGAGAAATTGAGACATCAG
ACCAGTGGTACAAACTCAACAGAGAAAGTAATACTACCTAATATACTTCATAGTTATATCAAAA
ACCTAAACTTAGATTTCACATCACCATATGGATCAACTGGTAATAATGAAGTATTAAGCATACT
TCGTAGTAGGTTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.140913735
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017