Detail information of AT2G07743_circ_g.1


General Information
CircRNA Name AT2G07743_circ_g.1
ID in PlantcircBase ath_circ_013039
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3255832-3255905  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method PcircRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_igg.2 AT2G07743_circ_g.2 2_circ_igg.3 2_circ_igg.4 2_circ_igg.5 2_circ_igg.6 2_circ_igg.7 2_circ_igg.8 2_circ_igg.9 2_circ_igg.10 2_circ_igg.11 2_circ_igg.12 2_circ_igg.13 2_circ_igg.14 2_circ_igg.15 2_circ_igg.16 2_circ_igg.17 2_circ_igg.18 2_circ_igg.19 2_circ_igg.20 2_circ_igg.21 2_circ_igg.22 2_circ_igg.23 AT2G07687_circ_g.1 2_circ_ig.2
Support reads 2
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   AG-GT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGGGCGGTGCTCTGACCGATTGAACTACAATCCCcgggactgacggggctcgaacccgcag
cttccgcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCGATTGAA
CTACAATCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.996434589
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017