Detail information of BGIOSGA012250_circ_g.4


General Information
CircRNA Name BGIOSGA012250_circ_g.4
ID in PlantcircBase osi_circ_004687
Alias 3:8699414|8699828
Organism Oryza sativa ssp. indica
Position chr3: 8699414-8699828  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012250_circ_g.1 BGIOSGA012250_circ_g.2 BGIOSGA012250_circ_g.3 BGIOSGA012250_circ_g.5 BGIOSGA012250_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012250-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGGCGGCGCCTTCACCGCCGCCCTTGCGCTCCTCATCGCCGCCGGTGGCACGGGCGTCACCG
ACAAAGTGAACCAGCTGCTCACTTTCGTCATGATAGgggttcgttccgagcgcggcgtgcatgg
tcacctgctgggcgttcctggtgatcgaggcgctcctcctggtcgagatcaacgtccacctgcg
gcggaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTCGTTCCGAGCGCGGCGTGCATGGTCACCTGCTGGGCGTTCCTGGTGATCGAGGCGCTCC
TCCTGGTCGAGATCAACGTCCACCTGCGGCGGAAGAAGGGGAAGGACGCCGGCGGCGACGGCGA
TGGCGGCGGCGGCGGGCAGCTGGAGGTCATATCGCTGAAGAGCATGGCGCAGGAGACCCTGGGC
GAGTGGGGAGGGAACCTGGCCGCCGCGGCCTACCTGTTCCTGTCCTACACCTCCATGGTCGCCT
ACACGTCCAAGTCCGGCGAGGTGCTCTCCCGCGTGGTCGCCGGCGTTCCCGAGCCCGTCTCCGG
CGGCGCCTTCACCGCCGCCCTTGCGCTCCTCATCGCCGCCGGTGGCACGGGCGTCACCGACAAA
GTGAACCAGCTGCTCACTTTCGTCATGATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8699588-8699822(-)
8699439-8699462(+)
Potential amino acid sequence MLFSDMTSSCPPPPPSPSPPASFPFFRRRWTLISTRRSASITRNAQQVTMHAALGTNPYHDESE
QLVHFVGDARATGGDEERKGGGEGAAGDGLGNAGDHAGEHLAGLGRVGDHGGVGQEQVGRGGQV
PSPLAQGLLRHALQRYDLQLPAAAAIAVAAGVLPLLPPQVDVDLDQEERLDHQERPAGDHARRA
RNEPLS*(-)
MVTCWAFLVIEALLLVEINVHLRRKKGKDAGGDGDGGGGGQLEVISLKSMAQETLGEWGGNLAA
AAYLFLSYTSMVAYTSKSGEVLSRVVAGVPEPVSGGAFTAALALLIAAGGTGVTDKVNQLLTFV
MIGVRSERGVHGHLLGVPGDRGAPPGRDQRPPAAEEGEGRRRRRRWRRRRAAGGHIAEEHGAGD
PGRVGREPGRRGLPVPVLHLHGRLHVQVRRGALPRGRRRSRARLRRRLHRRPCAPHRRRWHGRH
RQSEPAAHFRHDRGSFRARRAWSPAGRSW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021