Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA012250_circ_g.4 |
ID in PlantcircBase | osi_circ_004687 |
Alias | 3:8699414|8699828 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 8699414-8699828 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA012250 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA012250_circ_g.1 BGIOSGA012250_circ_g.2 BGIOSGA012250_circ_g.3 BGIOSGA012250_circ_g.5 BGIOSGA012250_circ_g.6 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA012250-TA:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8699588-8699822(-) 8699439-8699462(+) |
Potential amino acid sequence |
MLFSDMTSSCPPPPPSPSPPASFPFFRRRWTLISTRRSASITRNAQQVTMHAALGTNPYHDESE QLVHFVGDARATGGDEERKGGGEGAAGDGLGNAGDHAGEHLAGLGRVGDHGGVGQEQVGRGGQV PSPLAQGLLRHALQRYDLQLPAAAAIAVAAGVLPLLPPQVDVDLDQEERLDHQERPAGDHARRA RNEPLS*(-) MVTCWAFLVIEALLLVEINVHLRRKKGKDAGGDGDGGGGGQLEVISLKSMAQETLGEWGGNLAA AAYLFLSYTSMVAYTSKSGEVLSRVVAGVPEPVSGGAFTAALALLIAAGGTGVTDKVNQLLTFV MIGVRSERGVHGHLLGVPGDRGAPPGRDQRPPAAEEGEGRRRRRRWRRRRAAGGHIAEEHGAGD PGRVGREPGRRGLPVPVLHLHGRLHVQVRRGALPRGRRRSRARLRRRLHRRPCAPHRRRWHGRH RQSEPAAHFRHDRGSFRARRAWSPAGRSW*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |