Detail information of BGIOSGA012250_circ_g.1


General Information
CircRNA Name BGIOSGA012250_circ_g.1
ID in PlantcircBase osi_circ_004685
Alias 3:8698358|8698521
Organism Oryza sativa ssp. indica
Position chr3: 8698358-8698521  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA012250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012250_circ_g.2 BGIOSGA012250_circ_g.3 BGIOSGA012250_circ_g.4 BGIOSGA012250_circ_g.5 BGIOSGA012250_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCAACACGGTGCATGATTTTAGAGGAAGACAACGCGAAAAAAATCGATGGAATCAATCACC
CTCTCATCGTAGTACTCCcctacacctgacgagcctattgctagcatcatcacaatcagaatcc
ctaaaacgaacgatcgcctgcgccgatttcgacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTACACCTGACGAGCCTATTGCTAGCATCATCACAATCAGAATCCCTAAAACGAACGATCGCC
TGCGCCGATTTCGACATGTGATCAACACGGTGCATGATTTTAGAGGAAGACAACGCGAAAAAAA
TCGATGGAATCAATCACCCTCTCATCGTAGTACTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021