Detail information of BGIOSGA012250_circ_g.2


General Information
CircRNA Name BGIOSGA012250_circ_g.2
ID in PlantcircBase osi_circ_004686
Alias 3:8698365|8699655
Organism Oryza sativa ssp. indica
Position chr3: 8698365-8699655  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA012250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012250_circ_g.1 BGIOSGA012250_circ_g.3 BGIOSGA012250_circ_g.4 BGIOSGA012250_circ_g.5 BGIOSGA012250_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA012250-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCAGCTGGAGGTCATATCGCTGAAGAGCATGGCGCAGGAGACCCTGGGCGAGTGGGGAGGGAA
CCTGGCCGCCGCGGCCTACCTGTTCCTGTCCTACACctgacgagcctattgctagcatcatcac
aatcagaatccctaaaacgaacgatcgcctgcgccgatttcgacatgtgatcaacacggtgcat
gattttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACGAGCCTATTGCTAGCATCATCACAATCAGAATCCCTAAAACGAACGATCGCCTGCGCCG
ATTTCGACATGTGATCAACACGGTGCATGATTTTAGAGGAAGACAACGCGAAAAAAATCGATGG
AATCAATCACCCTCTCATCGTAGTACTCCCTCCATTTCACAATGTAAGTCATTCTAACATTTCT
CGCATTCATATTGATGTTAATAAATCTAGATTAATGAATTTAAACATATATATTCATCTAGATT
TATTAACATTCATATAAATATAGATAATGCTAAAATAACTTACATTGTGAAATTACATTGTGAA
ACGGAGGATGTATATTCATATCTCGGACCGGTGACAGGTCCCTCCCTTGCCTTGACCTTTCCAC
ATGACACCGAAAGATTATACTACTAATACTAGTCTACAACGTACGGTGAAGTAATTAGTGATGG
CCCATCTATCAGGATTCAGGACCATGAATTTGGCACGGAACTGACAGGATATCTGATCGCCAAA
AATGAAAGTAGTAGCAGCAGTTCTAGTAGTACTATCATGAGACAGATCTGAAGTAGCCGTCCAC
ATGTACCCCCCACAAACAGCTGAATTTCTCTGTCTTTGTTGTGAGGAGTAGTTACGAGCATTCA
AGGTTCACTTGGTTAATTGTCGACCCACCAACCTCAAGCATTCTTGATCTGGCAAATTCGTAAA
AAAAAAAAAAAAAACTCCCGAACAGAAATGGAACAAGAAGAAAAATCTGAACTTGAACTTTTCC
TTTGTATGGTGGATGTTTAAGTTCTTGTCGATTACTCATATTCTCCAATAAATCAAAACGGTTT
ATTATAAAATAAAAATTAGTTTATAGGTAAAATTTTTATATACATGTTTTTAGAGATTTAAAAG
TTAATACTTGAAAAAAAAATGCATTGAAAATATCTTAAAATCATCTTAAAAATTAAGTTTTAAG
AAAATAAACTTTGGCTTTAACTTATTAAGGTCCGCCGATGTGACTCTTGCTAGGGTCGCTGGCA
TTGCTGATGGTCGTGCAATTGGCAGGGGTTCGTTCCGAGCGCGGCGTGCATGGTCACCTGCTGG
GCGTTCCTGGTGATCGAGGCGCTCCTCCTGGTCGAGATCAACGTCCACCTGCGGCGGAAGAAGG
GGAAGGACGCCGGCGGCGACGGCGATGGCGGCGGCGGCGGGCAGCTGGAGGTCATATCGCTGAA
GAGCATGGCGCAGGAGACCCTGGGCGAGTGGGGAGGGAACCTGGCCGCCGCGGCCTACCTGTTC
CTGTCCTACAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021