Detail information of BGIOSGA012250_circ_g.5


General Information
CircRNA Name BGIOSGA012250_circ_g.5
ID in PlantcircBase osi_circ_004688
Alias 3:8699414|8699832
Organism Oryza sativa ssp. indica
Position chr3: 8699414-8699832  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA012250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012250_circ_g.1 BGIOSGA012250_circ_g.2 BGIOSGA012250_circ_g.3 BGIOSGA012250_circ_g.4 BGIOSGA012250_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA012250-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGCGCCTTCACCGCCGCCCTTGCGCTCCTCATCGCCGCCGGTGGCACGGGCGTCACCGACAA
AGTGAACCAGCTGCTCACTTTCGTCATGATAGGTTGgggttcgttccgagcgcggcgtgcatgg
tcacctgctgggcgttcctggtgatcgaggcgctcctcctggtcgagatcaacgtccacctgcg
gcggaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTCGTTCCGAGCGCGGCGTGCATGGTCACCTGCTGGGCGTTCCTGGTGATCGAGGCGCTCC
TCCTGGTCGAGATCAACGTCCACCTGCGGCGGAAGAAGGGGAAGGACGCCGGCGGCGACGGCGA
TGGCGGCGGCGGCGGGCAGCTGGAGGTCATATCGCTGAAGAGCATGGCGCAGGAGACCCTGGGC
GAGTGGGGAGGGAACCTGGCCGCCGCGGCCTACCTGTTCCTGTCCTACACCTCCATGGTCGCCT
ACACGTCCAAGTCCGGCGAGGTGCTCTCCCGCGTGGTCGCCGGCGTTCCCGAGCCCGTCTCCGG
CGGCGCCTTCACCGCCGCCCTTGCGCTCCTCATCGCCGCCGGTGGCACGGGCGTCACCGACAAA
GTGAACCAGCTGCTCACTTTCGTCATGATAGGTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021