Detail information of AT2G06990_circ_g.8


General Information
CircRNA Name AT2G06990_circ_g.8
ID in PlantcircBase ath_circ_012992
Alias 2:2899608-2900208
Organism Arabidpsis thaliana
Position chr2: 2899608-2900208  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.1 AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.5 AT2G06990_circ_g.6 AT2G06990_circ_g.7
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06990.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGATACAACATGAATGCAAACTGGAAATTGACGTGGAAGAGTATGTGGAATCCACCATCAGG
CCTTTCCTGATGGATGTTATCTACTCTTGGTCAAAGctccaaaagtttcgagatgagcttaaga
accgatctcgggtattaaagaaacttggacacattgatgctgatggtgtcgtccaggtaaaggg
acgagctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 399
Transcript exons: 2899608-2899761,2899879-2900027,2900113-2900208
CTCCAAAAGTTTCGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGACACATTG
ATGCTGATGGTGTCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGGATGAATT
GCTTGTCACTGAACTGATGTTTAATGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCC
CTTGCAAGCTGTTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTA
CCAAACCATTGCAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGATACAACATGAATGCAA
ACTGGAAATTGACGTGGAAGAGTATGTGGAATCCACCATCAGGCCTTTCCTGATGGATGTTATC
TACTCTTGGTCAAAG

Genomic sequence CTCCAAAAGTTTCGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGACACATTG
ATGCTGATGGTGTCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGGATGAATT
GCTTGTCACTGAACTGATGTTTAATGGTATGACAACTGCTTTAGCTACACAGTTCTAAGTGTAG
GCCTTTTAGGTGACTGAGGCAGTGTATAATGGTTGTATCACACTATATATAATTGCGTTGTGTG
TTCCTTACCTACCAGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTGCAAGCTG
TTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTG
CAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGGTAATTTAATTTCCCAGCTGAAAGCTTG
TTTATTTATCTGTGCGAGCTATTACTTTTTGGATTCCTCATTGTTTTGTGATGCCAGATACAAC
ATGAATGCAAACTGGAAATTGACGTGGAAGAGTATGTGGAATCCACCATCAGGCCTTTCCTGAT
GGATGTTATCTACTCTTGGTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.351864857
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020