Detail information of Os04g0583101_circ_g.3


General Information
CircRNA Name Os04g0583101_circ_g.3
ID in PlantcircBase osa_circ_024988
Alias NA
Organism Oryza sativa
Position chr4: 29457448-29457603  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os04g0583101
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os04t058310
1-01)
Parent gene strand +
Alternative splicing Os04g0583101_circ_g.2 Os04g0583101_circ_g.4 Os04g0583101_circ_g.5 Os04g0583101_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   TT-CG
Number of exons covered Os04t0583000-01:1
Os04t0583000-01:1
Os04t0583101-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGGTGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAATGCAGCCGATTCAA
CGAGCTCATCGAGCcgatcatcaacgcgttcaaccggtcaggagaactggaccggtgcatggat
ttgtaccaggagttcagggagacaggag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 156
Transcript exons: 29457448-29457603
CGATCATCAACGCGTTCAACCGGTCAGGAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTT
CAGGGAGACAGGAGGAAAGGTGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAA
TGCAGCCGATTCAACGAGCTCATCGAGC

Genomic sequence CGATCATCAACGCGTTCAACCGGTCAGGAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTT
CAGGGAGACAGGAGGAAAGGTGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAA
TGCAGCCGATTCAACGAGCTCATCGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.383013675
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016