Detail information of BGIOSGA014534_circ_g.5


General Information
CircRNA Name BGIOSGA014534_circ_g.5
ID in PlantcircBase osi_circ_014671
Alias Chr04:29026048_29026492(MH63RS2), Chr04:29069099_29069543(ZS97RS2), Chr04:29026048_29026492(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27266587-27267031  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014534
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014534_circ_igg.1 BGIOSGA014534_circ_g.2 BGIOSGA014534_circ_g.3 BGIOSGA014534_circ_igg.4 BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_g.6 BGIOSGA014534_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014534-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTACTAACTCAAACATAACAGCACGATT
CACGCCACGTGAAGTAACCTCAGGAGTAATAGATACccttgtggtaggcaattcacgtaacaca
atgtcaaggacttgaagggcttcttgaggagcatctgcttgccttccagctagaaacatagcca
aatggtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTGGTAGGCAATTCACGTAACACAATGTCAAGGACTTGAAGGGCTTCTTGAGGAGCATCT
GCTTGCCTTCCAGCTAGAAACATAGCCAAATGGTGAAGATCAGCACGGGCAGCAAACTTGATCA
CCACCCTAAATAGTCTCTCACGCCTTAAAATAGAAGGAATGTCAGTAACAAGTTTTTAATAGAT
ATTTAACTAAAGATAAAATAGCAATAGCATACCTTTGGGTGCCTTGGCCACCACCAAGACTATC
TTCCTCATCTTGAAGAGTAATTTCAAATGTCCTAGAAGCAAAAGGCAATGGTCCAGCTGTGTAA
AGACTCTTCCTTCCATCATAGGCAGGTAGACGCCCGCCCAAATGGGAATATCTATACAGCGTTA
CTAACTCAAACATAACAGCACGATTCACGCCACGTGAAGTAACCTCAGGAGTAATAGATAC
Conservation Information
Conserved circRNAs osa_circ_024919
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021