Detail information of 5_circ_ag.7


General Information
CircRNA Name 5_circ_ag.7
ID in PlantcircBase ath_circ_037847
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4095378-4099995  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 3
Tissues root, inflorescences, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATCTACATGCTCCCATTGGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAA
CACCTTATGATTCCTTTTGGTGTTGCTATGGCACTGgaattgaatccttctcaaaactgggaga
ttccatatattttcaagaagatggtgcaactccagctctttatgtcacccaatatatatcaagc
tcacttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGC
TCTTTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATATCT
CAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTT
CCAAAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGATGG
ATCCAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGAC
TAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGAT
TTGAGCATTAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGA
GAATCATATTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAA
TCTGGTGATCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTATAA
ACACACAGTTTTGCTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTATATG
TATAAATTGTATGCAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAGAGT
ACGCATCTCTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGACTG
GAGCATCACAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAACAGT
TACCTTGTCACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACCAAA
CCATCACAATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAGGCT
CGTGACTGATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTCATG
CTTGAGCCGTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAGTTC
AAGCTTCTTCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGGGAA
GCTAGGAAGCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAAACC
CTAAAGCAAGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTAAAG
AGGCAGCAAGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGATGAG
CGGAACACAGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAATGTG
TACTTCAGTGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAAGTC
TCATTTGAAATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGTGTT
CTGCAATGTCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTATAA
ATTGTGCTAACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTGTGT
TGCCTTGAGCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACCATA
GTTATTGTATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCATAAAC
ATTACTTACGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATAACT
TCTATAGAAGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAATCA
CAAATCAAAGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAAGAT
TTTGGAAAAACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGACAT
ATCTACTTTCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACACCC
CCTTAATCTTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTATCCA
AATCCTCCTCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCAATC
GTTAGAAAATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTCTTC
TCATTATTTTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATTCTG
AACGTGGGATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGAAGT
CTGGTGTGATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGCGAA
AGAGTGTACAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAATCA
CAGAACGCAAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACTCTG
CTTGGTCTACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGACTAT
GTTGTATAGAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTGCAC
GACGTTAGGCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATCTAT
TGATGTTGGATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGG
AGTTCCCTATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATAAAC
CTCTGCCTTTTTCCCCAATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGAAAA
GGTTTTGAGATTTGATGTTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGACATT
TCATAGACACTTGAAAGGATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTTTTA
GTTGATGGCTCAAAAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTATAT
GTGGGCAAGTACTCATAACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTAGCG
GAATGCCAGCAGAAATATGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACCGGT
TTGAAGCTATAACACATGTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGACCCT
TTGACTGAGTTGAAGATTGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAATTTT
GACAGATTTTGGCCGGCCTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAAGAT
GGCAACAGGGATGGCTGATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGTGTT
GAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTAT
ACAGCATCACTGTGAGTTAAAATCTTATCAGACTCTAAACTCCAACCTTAGATTTCTATCTAGC
TTTGTGTTATATCATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACAT
CTCTTTGACAAGCCTTGCTTTCTCGGAGTCCTCGCAATTCAGGTAATTTACTTGATGATTAGCT
TGAAGCCTTGAAGAGATGTGAATGGTAAGGTCACATAACTTGACATGTTTGTTTGCAGGCCGAT
GATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATG
AAATCACTGGTGATCTACTCCATAAGGTATCGAAGAGTAACCAAGAAAAGTGTGACATTTTTAT
CAAAGAAGATATTGGTTCTCTTGATTCTGAAATCTGCATTTCCAGGAAATCCCGATGTTCTTTA
TGGACATAGTTAATGCTTCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAGTTCTGGTA
CTACCATTACTTGACTTTAGAGTTTGGTTCTTTGTAACATGACTTTTTGTTTTAAGTCTTAACC
ATGATTTGGGAATATTTAACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGA
AAACGAGGAATCATGTACTACTTATAACATGCTCAAGGTAGGATTTCAAACTTCCCCACACCCC
CACCCCCCTCTTTTCATTTGCTCAACGTAACATATTGACACTTGTACAATTTCAGGTCTCTAGG
AATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTATTACGAGCGCGCTTTGACCAACG
GTGTGCTCGGAATTCAAAGAGGAACCGATCCCGGACGGATGATCTACATGCTCCCATTGGGTAA
AGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTTTGGTGTTGC
TATGGCACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.822126829
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017