Detail information of Os09g0431600_circ_g.5


General Information
CircRNA Name Os09g0431600_circ_g.5
ID in PlantcircBase osa_circ_039276
Alias NA
Organism Oryza sativa
Position chr9: 15795524-15799060  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0431600
Parent gene annotation Cystathionine beta-synthase, core domain containing protein. (Os
09t0431600-00)
Parent gene strand +
Alternative splicing Os09g0431600_circ_g.1 Os09g0431600_circ_g.2 Os09g0431600_circ_g.3 Os09g0431600_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0431600-00:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGC
TGCGTGGGTATTGTTCACCGACAGGATTGTACCAAGgggctctttgcatttttggtgagataat
aaagcaggctggcaacaacaaagacttgagacccaaacctcatctttatctttcaattatgaga
gcttttgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 557
Transcript exons: 15795524-15795756,15797468-15797545,15798727-15798795,15
798884-15799060
GGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAGACTTGAGACCCAA
ACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTTAGATATGGTCAAG
AGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCGGCAAAAGAAGAGG
CAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGATTGACATGGCTAGAGGACTTCT
AAGAAGAATACTGAATGAGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGGCATGGTGGCAGTT
AAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGACCTCATGTTTTTCCACAGATTG
TCTTGAATGATCCTGTTGAGAAGTATATGATTCCATTTCAAGAAACCCAGCCATTGCATGCTGA
CTTAATCTTGGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGAC
TGGGGAAGCTGCGTGGGTATTGTTCACCGACAGGATTGTACCAAG

Genomic sequence GGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAGACTTGAGACCCAA
ACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTTAGATATGGTCAAG
AGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCGGCAAAAGAAGAGG
CAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGGTAGACATGAAATTTATTTATTT
GATAATATGATTCGGATTATTAACCATGAAATACTTTGGTCATCTTACTCCTAACTTCACTAAA
TTTTGACTAGGATGGGTAAATAGCATCATCTTCTGTTTTGAGGTGCATACTAGGTAGGAAAACA
GTAGTGCCTTTTGTGTAAATTTAGTCTAAACTATTGACACCCCTGTCAAGAATGTGAAAATGCT
AAAATGTATTTAGTATTAAAGGGATCAAGGAACAATTTTCATCCAATAAATCAACTTATTCCAA
CATGCACCCTTTTCAATGTCTTTGATTTTTTTTAGCAAGAACAGAAAACTTTATTTTCTTTTCT
TGTGATTTCAAAGGTCCATGATGTTTCATTATTTGACTACAAGTATATTCTTCCCATTTTTCAT
ATTATAATAGATGGGTATGCATTGTGATTTGTGGAAAACATATGTGGAACCCGGGGAGCTGGTG
TTTTCATCAACGAAAACACAATAAAGTCATAAAGTTTATGAACCTTCCAAATCCTCTCTAACTT
TATAAGTTAGAGGTCACTAATTCCTAAAGCTTAACATGCAAAGATGTCACATTATCATCTACGA
ACAATTATTACATTTAAGCATCATGCAAGCATGCTATATTATCTATAATTAATAATTTATTAAA
TTTTAGAGATTTAAAATGTAAGCATGTTAAATCATTCCACATAATTCACATAAATTTCAATATA
TCTCTCTTATCAATTTTAATATCCTATATACCTATATAGTTTTTTTATGAAATATATACCTATA
TAGTTCATCATCACTTAGTTCATATTATTTTTCTTTTATCTCATTAAGTCATATCACATCAATT
GTTTTTAGCCCTTAGATGATTAATCTATGGTTTAAATTACCTTTGTTCTTTTGTTCTCTCATTA
AGCCATATCATCTCAATGTTTTAGCCCTTAGATGTATGGTCTAAATTATCTTCTTTCTTTTGTT
CTCTCATAAAGTCACATCATCGTACTTTTACATTTGAATCATCATTCTACATACTATTTAAATT
TAAATTACATCAACTTATGTAAACTTATGTTTATGTAAGCTTATATTGTTTAAGCTATCTTACA
CATTATACTTATTATTATCATAGTAAACTCCCACAGCAATGCGCGGGGTTTCACCTAGTTTAAT
ATATGTCCCTGTTGTGAATAATGAAAGAAAACAAACAATACTTTAATATGAGCTGTGCATGACT
GACTTGTTGCCCTTTTATGTTGTTTATATAATGGATGAATTTACATTGAAATTTTTTCATGATT
ACATAAATTTATGTGCATTATTTCTATGAAATTTTAGGTATTTTACTATTTTGGAACAGTAAAA
TGTACATTATGCTGGTTTCACAAAATGGCTCCCCTGAGCTCAAAGAATTTTTTTCCAATTATAT
TTTATTGCTTAATTGAATATTTATATGAGCTTAGTGTTATGTGTTCACAATATCTTGAGAAAGC
AGAATTATTTTAAAATAAGGTCTGCTTTAAATGCTAAACTGCCACTTAGCCTATATATTAGTAC
CAAATATAACACAGCAGTGCAATGTTCATGAGTTTGCTTCTCTGTCTAGGATTTCTGTTATTCT
TTTTTTCCTTGGATGTGTTTGCTTTTCTTTGTTAAATAGACTTCAAATTTTCATGATTCTACCA
CTAAAAGACTCTTTTTTCCCCCAGATTGACATGGCTAGAGGACTTCTAAGAAGAATACTGAATG
AGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGGCATGGTATTCTTCTTTCGATTGTGTTCTTA
AATAGTATTTCACTTCATTGATTATAAAGGTTAGCTACATCATGGACATGGAACAATTATCTTG
AAATCCTAACTTCTTATGTGAACCTACATGCTCTTGGCATGTTTTGATCTTACAATGCAAAACT
GAACGCTTCCAGTCTGGCTGCGCCCGCCCTATTATATATTTCTGAACACATTATGTATGCTTGA
ATAATTTGTTCTTGAATATAATTTCATTTACCTAGATTTTTTATATTTTAAGATTCATTAGTAT
TACACGGGTGAACTACATAATTCTTGTCAGCATAGTCTCTGATGTTTCTGAACTCACTATTGTG
CATTATTGTAGCCATACAACAAATACTGCAAATTTTCTGAAGAGTATAATTGGTTTCAGCAAAC
TGTACCTTAAGGCTTCCCAAGTGGTGTGAAATTGCATATCTAGTTTATAAGATATTCATAATAT
TATGTAGAAAAAAAAAGTTTCAAGCCTGTGCAATCTTGTTATGGCCTTATTTTTAAGTGAACTA
TCCTGTCAATGTCTTATGAAAATCTATTTGGTTGTAACAGTAAAAAAATAGGAAGACCTGTGAA
CTATATCTTTTCTTTTCCTGATGCCTAAAAGTTGAATATTTTCATGTTGTTCTGAATGGGTGAA
ACTGCGGGTTTAGTTTGAAGTTGGGACCTGGTTCCAGAAGCATGTAGAAAATAACCAAATGTTC
ATTGCAAAATAAAGTCAAACGTTCTTTTCTGTTCTGACAGTTCTATTAAGGCCTGGTTTAGTTC
CCAAATTTTTTTCCCAAAAACGTCACATCAAATCTTTGGACACATGCATGGAGCATTAAATATA
GATAAAAACAGAAACTAATTGTATAATTTGCATGGAAATCGCGAGATGAATCTTTTGAGCCTAA
TTAGTCCATGATTAGCCATAAGTGCTACAATAACCCACATGTGCTAATGATGGTTTAATTAGGC
TCAAAAGATCCATCTCGTGATTTCCAGGCGAGTTATGAAATTAGTTTTTACATTCGTGTCCGAA
AACCCCTTCCGACATCCGGTCAAACATCCGATATGACACCCAAAAATTTTCTTTTTGCGAACTA
AGCACACCCTAATGTAATGTGTAAAGCACCACCCCTTTTTAAGTTTATTTTATTCTGTTTGTAC
CAGGTGGCAGTTAAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGACCTCATGTTT
TTCCACAGGTTGGTGCCTGCTGTGTTCATATTTTTCTACCCCTTTCTCCACTGCACTCTGCTTG
CCATATCTGAAGTATGTCTATTGGCATCACAGATTGTCTTGAATGATCCTGTTGAGAAGTATAT
GATTCCATTTCAAGAAACCCAGCCATTGCATGCTGACTTAATCTTGGAGGAGGTTGTCATGCGA
TTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGCTGCGTGGGTATTGTTCACC
GACAGGATTGTACCAAG
Conservation Information
Conserved circRNAs osi_circ_008073* osi_circ_018508
PMCS 0.311699635
Functional Information
Coding potential Y
Potential coding position 15799012-15795542(+)
15795611-15795547(+)
15795596-15799041(-)
15795538-15799004(-)
Potential amino acid sequence MTGEAAWVLFTDRIVPRGSLHFW*(+)
MRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEK
ECFSWTSRVGMVAVKVETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVV
MRFFKDPVVPIVDDWGSCVGIVHRQDCTKGLFAFLVR*(+)
MRFGSQVFVVASLLYYLTKNAKSPLVQSCR*(-)
MQRAPWYNPVGEQYPRSFPSHQQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017