Plant Circular RNA Database

Detail information of BGIOSGA030810_circ_g.9

			
						 General Information
					
						CircRNA Name
						BGIOSGA030810_circ_g.9
					
						ID in PlantcircBase
						osi_circ_008073
					
						Alias
						9:14338448|14341994
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr9: 14338448-14341994  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA030810						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA030810_circ_g.1 BGIOSGA030810_circ_g.2 BGIOSGA030810_circ_g.3 BGIOSGA030810_circ_g.4 BGIOSGA030810_circ_g.5 BGIOSGA030810_circ_g.6 BGIOSGA030810_circ_g.7 BGIOSGA030810_circ_g.8 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA030810-TA:4

General Information
CircRNA Name	BGIOSGA030810_circ_g.9
ID in PlantcircBase	osi_circ_008073
Alias	9:14338448\|14341994
Organism	Oryza sativa ssp. indica
Position	chr9: 14338448-14341994 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA030810
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA030810_circ_g.1 BGIOSGA030810_circ_g.2 BGIOSGA030810_circ_g.3 BGIOSGA030810_circ_g.4 BGIOSGA030810_circ_g.5 BGIOSGA030810_circ_g.6 BGIOSGA030810_circ_g.7 BGIOSGA030810_circ_g.8
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA030810-TA:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGC
TGCGTGGGTATTGTTCACCGACAGGATTGTACCAAGgggctctttgcatttttggtgagataat
aaagcaggctggcaacaacaaagacttgagacccaaacctcatctttatctttcaattatgaga
gcttttgc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAGACTTGAGACCCAA
ACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTTAGATATGGTCAAG
AGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCGGCAAAAGAAGAGG
CAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGGTAGACATGAAATTTATTTATTT
GATAATATGATTCGGATTATTAACCATGAAATACTTTGGTCATCTTACTCCTAACTTCACTAAA
TTTTGACTAGGATGGGTAAATAGCATCATCTTGCATCATCTTCTGTTTTGAGGTGCATACTAGG
TAGGAAAACAGTAGTGCCTTTTGTGTAAATTTAGTCTAAACTATTGACACCCCTGTCAAGGATG
TGAAAATGCTAAAATGTATTTAGTATTAAAGGGATCAAGGAACAATTTTCATCCAATAAATCAA
CTTATTCCAACATGCACCCTTTTCAATGTCTTTGATTTTTTTTTAGCAAGAACAGAAAACTTTA
TTTTCTTTTCTTGTGATTTCAAAGGTCCATGATGTTTCATTATTTGACTACAAGTATATTCTTC
CCATTTTTCATATTATAATAGATGGGTATGCAATGTGATTTGTGGAAAACATATGTGGAACCCG
GGGAGCTGGTGTTTTCATCAACGAAAACACAATAAAGTCATAAAGTTTATGAACCTTCCAAATC
CTCTCTTACTATAAAGTTAGAGGTCACTAATTCCTAAAGCTTAACATGCAAAGATGTCACATTA
TCATCCACGAACAATTATTACATTTAAGCATCATGCAAGCATGCTATATTATCTATAATTAATA
ATTTATTAAATTTTAGAGATTTAAAATGTAAGCATGTTAAATCATTCCACATAATTCACATAAA
TTTCAATATATCTCTCTTATCAATTTTAATATCCTATATACCTATATAGTTTTTTTTTATGAAA
TATATACCTATATAGTTCATCATCACTTAGTTCATATTATTTTTCTTTTATCTCATTAAGTCAT
ATCACATCAATTGTTTTTAGCCCTTAGATGATTAATCTATGGTTTAAATTACCTTTGTTCTTTT
GTTCTCTCATTAAGCCATATCATCTCAATGTTTTAGCCCTTAGATGTATGGTCTAAATTATCTT
CTTTCTTTTGTTCTCTCATAAAGTCACATCATCGTACTTTTACATTTGAATCATCATTCTACAT
ACTATTTAAATTTAAATTACATCAACTTATGTAAACTTATGTTTATGTAAGCTTATATTGTTTA
AGCTATCTTACACATTATACTTATTATTATCATAGTAAACTCCCGCAGCAATGTGCGGGGTTTC
ACCTAGTTTAATATATGTCCCTGTTGTGAATAATGAAAGAAAACAAACAATACTTTAATATGAG
CTGTGCATGACTGACTTGTTGCCCTTTTATGTTGTTTATATAATGGATGAATTTACATTGAAAT
TTTTTCATGATTACATAAATTTATGTGCATTATTTCTATGAAAATTTAGGTATTTTACTATTTT
GGAACAGTAAAATGTACATTATGCTGGTTTCACAAAATGGCTCCCCTGAGCTCAAAGAATTTTT
TTCCAATTATATTTTATTGCTTAATTGAATATTTATATGAGCTTAGTGTTATGTGTTCACAATA
TCTTGAGAAAGCAGAATTATTTTAAAATAAGGTCTGCTTTAAATGCTAAACTGCCACTTAGCCT
ATATATTAGTACCAAATATAACACAGCAGTGCAATGTTCATGAGTTTGCTTCTCTGTCTAGGAT
TTCTGTTATTCTTTTTTTCCTTGGATGTGTTTGCTTTTCTTTGTTAAATAGACTTCAAATTTTC
ATGATTCTACCACTAAAAGACTCTTTTTTCCCCCAGATTGACATGGCTAGAGGACTTCTAAGAA
GAATACTGAATGAGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGGCATGGTATTCTTCTTTCG
ATTGTGTTCTTAAATAGTATTTCACTTCATTGATTATAAAGGTTAGCTACATCATGGACATGGA
ACAATTATCTGAAATCCTAACTTCTTATGTGAACCTACATGCTCTTGGCATGTTTTGATCTTAC
AATGCAAAACTGAACGCTTCCAGTCTGGCTGCGCCCGCCCTATTATATATTTCTGAACACATTA
TGTATGCTTGAATAATTTGTTCTTGAATATAATTTCATTTACCTAGAATTTTTATATTTTAAGA
TTCATTAGTATTACACGGGTGAACTACATAATTCTTGTCAGCATAGTCTCTGATGTTTCTGAAC
TCACTATTGTGCATTATTGTAGCCATACAACAAATACTGCAAATTTTCTGAAGAGTATAATTGG
TTTCAGCAAACTGTACCTTAAGGCTTCCCAAGTGGTGTGAAATTGCATATCTAGTTTATAAGAT
ATTCATAATATTATGTAGAAAAAAAAAGTTTCAAGCCTGTGCAATCTTGTTATGGCCTATTTTT
AAGTGAACTATCCTGTCAATGTCTTATGAAAATCTATTTGGTTGTAACAGTAAAAAAATAGGAA
GACCTGTGAACTATATCTTTTCTTTTCCTGATGCCTAAAAGTTGAATATTTTCATGTTGTTCTG
AATGGGTGAAACTGCGGGTTTAGTTTGAAGTTGGGACCTGGTTCCAGAAGCATGTAGAAAATAA
CCAAATGTTCATTGCAAAATAAAGTCAAACGTTCTTTTCTGTTCTGACAGTTCTATTAAGGCCT
GGTTTAGTTCCCAAATTTTTTTCCCAAAAACGTCACATCAAATCTTTGGACACATGCATGGAGC
ATTAAATATAGATAAAAACAAAAACTAATTGTATAATTTGCATGGAAATCGCGAGATGAATCTT
TTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAATAACCCACATGTGCTAATGATGGT
TTAATTAGGCTCAAAAGATCCATCTCGCGGTTTCCAGGCGAGTTATGAAATTAGTTTTTACATT
CGTGTCCGAAAACCCCTTCCGACATCCGGTCAAACATCCGATATGACACCCAAAAATTTTCTTT
TTGCGAACTAAGCACACCCTAATGTAATGTGTAAAGCGCCACCCCTTTTTAAGTTTATTTTATT
CTGTTTGTACCAGGTGGCAGTTAAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGA
CCTCATGTTTTTCCACAGGTTGGTGCCTGCTGTGTTCATATTTTTCTACCCCTTTCTCCACTGC
ACTCTGCTTGCCATATCTGAAGTATGTCTATTGGCATCACAGATTGTCTTGAATGATCCTGTTG
AGAAGTATATGATTCCATTTCAAGAAACCCAGCCATTGCATGCTGACTTAATCTTGGAGGAGGT
TGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGCTGCGTGGGT
ATTGTTCACCGACAGGATTGTACCAAG
						
					

			
		

Sequences
Splice junction sequence	GGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGC TGCGTGGGTATTGTTCACCGACAGGATTGTACCAAGgggctctttgcatttttggtgagataat aaagcaggctggcaacaacaaagacttgagacccaaacctcatctttatctttcaattatgaga gcttttgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAGACTTGAGACCCAA ACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTTAGATATGGTCAAG AGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCGGCAAAAGAAGAGG CAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGGTAGACATGAAATTTATTTATTT GATAATATGATTCGGATTATTAACCATGAAATACTTTGGTCATCTTACTCCTAACTTCACTAAA TTTTGACTAGGATGGGTAAATAGCATCATCTTGCATCATCTTCTGTTTTGAGGTGCATACTAGG TAGGAAAACAGTAGTGCCTTTTGTGTAAATTTAGTCTAAACTATTGACACCCCTGTCAAGGATG TGAAAATGCTAAAATGTATTTAGTATTAAAGGGATCAAGGAACAATTTTCATCCAATAAATCAA CTTATTCCAACATGCACCCTTTTCAATGTCTTTGATTTTTTTTTAGCAAGAACAGAAAACTTTA TTTTCTTTTCTTGTGATTTCAAAGGTCCATGATGTTTCATTATTTGACTACAAGTATATTCTTC CCATTTTTCATATTATAATAGATGGGTATGCAATGTGATTTGTGGAAAACATATGTGGAACCCG GGGAGCTGGTGTTTTCATCAACGAAAACACAATAAAGTCATAAAGTTTATGAACCTTCCAAATC CTCTCTTACTATAAAGTTAGAGGTCACTAATTCCTAAAGCTTAACATGCAAAGATGTCACATTA TCATCCACGAACAATTATTACATTTAAGCATCATGCAAGCATGCTATATTATCTATAATTAATA ATTTATTAAATTTTAGAGATTTAAAATGTAAGCATGTTAAATCATTCCACATAATTCACATAAA TTTCAATATATCTCTCTTATCAATTTTAATATCCTATATACCTATATAGTTTTTTTTTATGAAA TATATACCTATATAGTTCATCATCACTTAGTTCATATTATTTTTCTTTTATCTCATTAAGTCAT ATCACATCAATTGTTTTTAGCCCTTAGATGATTAATCTATGGTTTAAATTACCTTTGTTCTTTT GTTCTCTCATTAAGCCATATCATCTCAATGTTTTAGCCCTTAGATGTATGGTCTAAATTATCTT CTTTCTTTTGTTCTCTCATAAAGTCACATCATCGTACTTTTACATTTGAATCATCATTCTACAT ACTATTTAAATTTAAATTACATCAACTTATGTAAACTTATGTTTATGTAAGCTTATATTGTTTA AGCTATCTTACACATTATACTTATTATTATCATAGTAAACTCCCGCAGCAATGTGCGGGGTTTC ACCTAGTTTAATATATGTCCCTGTTGTGAATAATGAAAGAAAACAAACAATACTTTAATATGAG CTGTGCATGACTGACTTGTTGCCCTTTTATGTTGTTTATATAATGGATGAATTTACATTGAAAT TTTTTCATGATTACATAAATTTATGTGCATTATTTCTATGAAAATTTAGGTATTTTACTATTTT GGAACAGTAAAATGTACATTATGCTGGTTTCACAAAATGGCTCCCCTGAGCTCAAAGAATTTTT TTCCAATTATATTTTATTGCTTAATTGAATATTTATATGAGCTTAGTGTTATGTGTTCACAATA TCTTGAGAAAGCAGAATTATTTTAAAATAAGGTCTGCTTTAAATGCTAAACTGCCACTTAGCCT ATATATTAGTACCAAATATAACACAGCAGTGCAATGTTCATGAGTTTGCTTCTCTGTCTAGGAT TTCTGTTATTCTTTTTTTCCTTGGATGTGTTTGCTTTTCTTTGTTAAATAGACTTCAAATTTTC ATGATTCTACCACTAAAAGACTCTTTTTTCCCCCAGATTGACATGGCTAGAGGACTTCTAAGAA GAATACTGAATGAGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGGCATGGTATTCTTCTTTCG ATTGTGTTCTTAAATAGTATTTCACTTCATTGATTATAAAGGTTAGCTACATCATGGACATGGA ACAATTATCTGAAATCCTAACTTCTTATGTGAACCTACATGCTCTTGGCATGTTTTGATCTTAC AATGCAAAACTGAACGCTTCCAGTCTGGCTGCGCCCGCCCTATTATATATTTCTGAACACATTA TGTATGCTTGAATAATTTGTTCTTGAATATAATTTCATTTACCTAGAATTTTTATATTTTAAGA TTCATTAGTATTACACGGGTGAACTACATAATTCTTGTCAGCATAGTCTCTGATGTTTCTGAAC TCACTATTGTGCATTATTGTAGCCATACAACAAATACTGCAAATTTTCTGAAGAGTATAATTGG TTTCAGCAAACTGTACCTTAAGGCTTCCCAAGTGGTGTGAAATTGCATATCTAGTTTATAAGAT ATTCATAATATTATGTAGAAAAAAAAAGTTTCAAGCCTGTGCAATCTTGTTATGGCCTATTTTT AAGTGAACTATCCTGTCAATGTCTTATGAAAATCTATTTGGTTGTAACAGTAAAAAAATAGGAA GACCTGTGAACTATATCTTTTCTTTTCCTGATGCCTAAAAGTTGAATATTTTCATGTTGTTCTG AATGGGTGAAACTGCGGGTTTAGTTTGAAGTTGGGACCTGGTTCCAGAAGCATGTAGAAAATAA CCAAATGTTCATTGCAAAATAAAGTCAAACGTTCTTTTCTGTTCTGACAGTTCTATTAAGGCCT GGTTTAGTTCCCAAATTTTTTTCCCAAAAACGTCACATCAAATCTTTGGACACATGCATGGAGC ATTAAATATAGATAAAAACAAAAACTAATTGTATAATTTGCATGGAAATCGCGAGATGAATCTT TTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAATAACCCACATGTGCTAATGATGGT TTAATTAGGCTCAAAAGATCCATCTCGCGGTTTCCAGGCGAGTTATGAAATTAGTTTTTACATT CGTGTCCGAAAACCCCTTCCGACATCCGGTCAAACATCCGATATGACACCCAAAAATTTTCTTT TTGCGAACTAAGCACACCCTAATGTAATGTGTAAAGCGCCACCCCTTTTTAAGTTTATTTTATT CTGTTTGTACCAGGTGGCAGTTAAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGA CCTCATGTTTTTCCACAGGTTGGTGCCTGCTGTGTTCATATTTTTCTACCCCTTTCTCCACTGC ACTCTGCTTGCCATATCTGAAGTATGTCTATTGGCATCACAGATTGTCTTGAATGATCCTGTTG AGAAGTATATGATTCCATTTCAAGAAACCCAGCCATTGCATGCTGACTTAATCTTGGAGGAGGT TGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGCTGCGTGGGT ATTGTTCACCGACAGGATTGTACCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_039276* 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_039276*
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14338520-14341975(-)
14338462-14341938(-)
14341946-14338466(+)
14338535-14338471(+)
						
						Potential amino acid sequence
						
							MRFGSQVFVVASLLYYLTKNAKSPLVQSCR*(-)
MQRAPWYNPVGEQYPRSFPSHQQ*(-)
MTGEAAWVLFTDRIVPRGSLHFW*(+)
MRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEK
ECFSWTSRVGMVAVKVETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVV
MRFFKDPVVPIVDDWGSCVGIVHRQDCTKGLFAFLVR*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14338520-14341975(-) 14338462-14341938(-) 14341946-14338466(+) 14338535-14338471(+)
Potential amino acid sequence	MRFGSQVFVVASLLYYLTKNAKSPLVQSCR(-) MQRAPWYNPVGEQYPRSFPSHQQ(-) MTGEAAWVLFTDRIVPRGSLHFW(+) MRAFATIGDLDMVKRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEK ECFSWTSRVGMVAVKVETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVV MRFFKDPVVPIVDDWGSCVGIVHRQDCTKGLFAFLVR(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA030810_circ_g.9

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