Plant Circular RNA Database

Detail information of Os09g0431600_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os09g0431600_circ_g.2
					
						ID in PlantcircBase
						osa_circ_039273
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 15792799-15799060  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0431600						
					
						Parent gene annotation
						
							Cystathionine beta-synthase, core domain containing protein. (Os
09t0431600-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os09g0431600_circ_g.1 Os09g0431600_circ_g.3 Os09g0431600_circ_g.4 Os09g0431600_circ_g.5 						
					
						Support reads
						2
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0431600-00:9

General Information
CircRNA Name	Os09g0431600_circ_g.2
ID in PlantcircBase	osa_circ_039273
Alias	NA
Organism	Oryza sativa
Position	chr9: 15792799-15799060 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0431600
Parent gene annotation	Cystathionine beta-synthase, core domain containing protein. (Os 09t0431600-00)
Parent gene strand	+
Alternative splicing	Os09g0431600_circ_g.1 Os09g0431600_circ_g.3 Os09g0431600_circ_g.4 Os09g0431600_circ_g.5
Support reads	2
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0431600-00:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGC
TGCGTGGGTATTGTTCACCGACAGGATTGTACCAAGggtctggggatagcgagaaggatagatg
acgcatttgagatactggagtcaattgagaaagatacctctattgggagtccccggctctctcc
tcatctta

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 1146
Transcript exons: 15792799-15792931,15793925-15794016,15794111-15794272,15
794377-15794445,15794794-15794926,15795524-15795756,1579
7468-15797545,15798727-15798795,15798884-15799060
GGTCTGGGGATAGCGAGAAGGATAGATGACGCATTTGAGATACTGGAGTCAATTGAGAAAGATA
CCTCTATTGGGAGTCCCCGGCTCTCTCCTCATCTTATTTGTGGTTTTCTAAATGCCCTTATTGA
AGCTGGAGATATGCGGCGTGCCAATGCTCTTGTTGCCCGTTTTCGCCAAGTCCTTTATGAAGGC
CACTCCGTCTTACTATACAACTTGCTGATGAAGGGATACATAAAAAGCAACTTCCCTCTTGGAG
CTTTGACTGTGAAAGATGAGATATTACGTCAAGGTTTAAAGCCTGATAGATTGACCTACAACAC
CATAATTTCTGCCTGTGTAAAATCAGCAGAAATTGATATGGCTATCCGATTTCTGGAAGATATG
AAGGAAGAAGCTAAAAGGGATAATAATCCTGAACTCCTTCCAGATGCTGTTACCTACACAACAT
TACTTAAGGGTTTAGGAAATAGCCAAGACCTTTATTCAGTTTTGAAGATTGTGGTGGAGATGAA
ATCTGCACCTATTTCTATTGACCGGACGGCATACACAGCAATGGTAGATGCCTTGCTAGCCTGT
GGGTCTATTAACGGGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAG
ACTTGAGACCCAAACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTT
AGATATGGTCAAGAGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCG
GCAAAAGAAGAGGCAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGATTGACATGG
CTAGAGGACTTCTAAGAAGAATACTGAATGAGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGG
CATGGTGGCAGTTAAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGACCTCATGTT
TTTCCACAGATTGTCTTGAATGATCCTGTTGAGAAGTATATGATTCCATTTCAAGAAACCCAGC
CATTGCATGCTGACTTAATCTTGGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCC
TATTGTTGATGACTGGGGAAGCTGCGTGGGTATTGTTCACCGACAGGATTGTACCAAG
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCCTATTGTTGATGACTGGGGAAGC TGCGTGGGTATTGTTCACCGACAGGATTGTACCAAGggtctggggatagcgagaaggatagatg acgcatttgagatactggagtcaattgagaaagatacctctattgggagtccccggctctctcc tcatctta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1146 Transcript exons: 15792799-15792931,15793925-15794016,15794111-15794272,15 794377-15794445,15794794-15794926,15795524-15795756,1579 7468-15797545,15798727-15798795,15798884-15799060 GGTCTGGGGATAGCGAGAAGGATAGATGACGCATTTGAGATACTGGAGTCAATTGAGAAAGATA CCTCTATTGGGAGTCCCCGGCTCTCTCCTCATCTTATTTGTGGTTTTCTAAATGCCCTTATTGA AGCTGGAGATATGCGGCGTGCCAATGCTCTTGTTGCCCGTTTTCGCCAAGTCCTTTATGAAGGC CACTCCGTCTTACTATACAACTTGCTGATGAAGGGATACATAAAAAGCAACTTCCCTCTTGGAG CTTTGACTGTGAAAGATGAGATATTACGTCAAGGTTTAAAGCCTGATAGATTGACCTACAACAC CATAATTTCTGCCTGTGTAAAATCAGCAGAAATTGATATGGCTATCCGATTTCTGGAAGATATG AAGGAAGAAGCTAAAAGGGATAATAATCCTGAACTCCTTCCAGATGCTGTTACCTACACAACAT TACTTAAGGGTTTAGGAAATAGCCAAGACCTTTATTCAGTTTTGAAGATTGTGGTGGAGATGAA ATCTGCACCTATTTCTATTGACCGGACGGCATACACAGCAATGGTAGATGCCTTGCTAGCCTGT GGGTCTATTAACGGGGCTCTTTGCATTTTTGGTGAGATAATAAAGCAGGCTGGCAACAACAAAG ACTTGAGACCCAAACCTCATCTTTATCTTTCAATTATGAGAGCTTTTGCTACCATAGGTGATTT AGATATGGTCAAGAGACTGAACAAACGCATGTGGCCAGATTCAGTTGGATCAATTAGCCGTTCG GCAAAAGAAGAGGCAGATGAACTACTAATGGAAGCTGCCCTCAATAATAATCAGATTGACATGG CTAGAGGACTTCTAAGAAGAATACTGAATGAGAAGGAATGTTTCTCTTGGACAAGTAGAGTAGG CATGGTGGCAGTTAAAGTTGAAACCCTGTCTGGATTCACCAACTCTCTTCTTAGACCTCATGTT TTTCCACAGATTGTCTTGAATGATCCTGTTGAGAAGTATATGATTCCATTTCAAGAAACCCAGC CATTGCATGCTGACTTAATCTTGGAGGAGGTTGTCATGCGATTCTTCAAGGATCCTGTAGTTCC TATTGTTGATGACTGGGGAAGCTGCGTGGGTATTGTTCACCGACAGGATTGTACCAAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_018505 						
					
						PMCS
						0.322770718

Conservation Information
Conserved circRNAs	osi_circ_018505
PMCS	0.322770718

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							15793931-15799057(+)
15799012-15792808(+)
15792834-15799004(-)
						
					

						Potential amino acid sequence
						
							MRRANALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIIS
ACVKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAP
ISIDRTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMV
KRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVA
VKVETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVD
DWGSCVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMR
RANALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISAC
VKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPIS
IDRTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKR
LNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVK
VETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDW
GSCVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMRRA
NALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISACVK
SAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPISID
RTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLN
KRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVKVE
TLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDWGS
CVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMRRANA
LVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISACVKSA
EIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPISIDRT
AYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLNKR
MWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVKVETL
SGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDWGSCV
GIVHRQDCTK(+)
MTGEAAWVLFTDRIVPRVWG*(+)
MRHLSFSLSPDPWYNPVGEQYPRSFPSHQQ*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	15793931-15799057(+) 15799012-15792808(+) 15792834-15799004(-)
Potential amino acid sequence	MRRANALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIIS ACVKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAP ISIDRTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMV KRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVA VKVETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVD DWGSCVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMR RANALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISAC VKSAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPIS IDRTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKR LNKRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVK VETLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDW GSCVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMRRA NALVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISACVK SAEIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPISID RTAYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLN KRMWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVKVE TLSGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDWGS CVGIVHRQDCTKGLGIARRIDDAFEILESIEKDTSIGSPRLSPHLICGFLNALIEAGDMRRANA LVARFRQVLYEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTYNTIISACVKSA EIDMAIRFLEDMKEEAKRDNNPELLPDAVTYTTLLKGLGNSQDLYSVLKIVVEMKSAPISIDRT AYTAMVDALLACGSINGALCIFGEIIKQAGNNKDLRPKPHLYLSIMRAFATIGDLDMVKRLNKR MWPDSVGSISRSAKEEADELLMEAALNNNQIDMARGLLRRILNEKECFSWTSRVGMVAVKVETL SGFTNSLLRPHVFPQIVLNDPVEKYMIPFQETQPLHADLILEEVVMRFFKDPVVPIVDDWGSCV GIVHRQDCTK(+) MTGEAAWVLFTDRIVPRVWG(+) MRHLSFSLSPDPWYNPVGEQYPRSFPSHQQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0431600_circ_g.2

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