Detail information of BGIOSGA032403_circ_g.2


General Information
CircRNA Name BGIOSGA032403_circ_g.2
ID in PlantcircBase osi_circ_008777
Alias Chr10:414515_415479(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 262325-263289  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032403
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032403_circ_g.3 BGIOSGA032403_circ_g.4 BGIOSGA032403_circ_g.5 BGIOSGA032403_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032403-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTGATGTTCCCGTCGCAGACGCTTTAATTCTTTCAGTTCCTTAAATTCACGAATGACATTC
CTTCGGCAATCTCTGCAAAATCTTTTGCTGTCGAACcctgttctttgaatatcactgcagcagc
atccaaaagaaactctctggcaagttcaggactcttagcatgcttctgtggatgaacaccatcg
acatcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTCTTTGAATATCACTGCAGCAGCATCCAAAAGAAACTCTCTGGCAAGTTCAGGACTCTT
AGCATGCTTCTGTGGATGAACACCATCGACATCAGTATCATTTCCATCCCTGTCCATAGCATCA
TCTTCCTGCTCATGTATAACAAATTAGACTATATGAATTGGCAGACCATCAACATGGACTAACA
AATGTTCTGATCATTCTAATCTTATTACTTAAGAAATGAGCTTACATCCTCTTCCTCAGCTTCT
TCAGCATGCTCAAAGAAACTTTGAATGCTTTCTCCCTTAGTAATTGTCACAAACCCATCCCCCA
CGATCAGCCTGCGGTGAACACATGATTGGCCCTTCAAGGCATGGGCCTTCACATAGAAATCTGT
GTTCTTGTTATCCGCATAATGCGCTCTCAGAGTAACAAAATAATCTTCAAACTGGTCAAGATCA
AGGCCCTTCCTGTGCACTTGCCCATTCATCCCCACAGCTTCAAATCCTAGTATATCAGATTTCC
CTTTTTCTGTTCCAACAGCAAACTCAAAACGATTATAGGACTTATCTTGATCCAAGAAAGATTG
GCGGCAATCAACTAAGACAGCATCCTCAAACACCTGAAAATATAAAATGCCAGATGTTAACCAC
CTATAGGCAAACTCCATGTCATCTACTGTGCAATTAAAAATGGGAATGCAACTCCTTTTAGTCT
TATTTTCCATAGTTTTACCCTTATAAGGTTTTGCTAGCTGAGTGTATTCGAAGAAGAGAAAGCA
GAAACAAGGAAAGAACAATTGTGAGAGTGCATATAGAAAGGAGCACCATCCTTACCTCACACCG
GAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGACGCTTTAAT
TCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATCTTTTGCTGT
CGAAC
Conservation Information
Conserved circRNAs osa_circ_006101
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021