Detail information of BGIOSGA032403_circ_g.3


General Information
CircRNA Name BGIOSGA032403_circ_g.3
ID in PlantcircBase osi_circ_008778
Alias Chr10:455423_459508(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 262325-266407  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA032403
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032403_circ_g.2 BGIOSGA032403_circ_g.4 BGIOSGA032403_circ_g.5 BGIOSGA032403_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032403-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTGAACAGTACAAATTCCTGCGTGCATGCTCAATGAGAGTCTGCTTATCGATCCTGAGGAG
CTCATGCCGTGCTTGAGGCGACAAGGCACTCCAGAAcctgttctttgaatatcactgcagcagc
atccaaaagaaactctctggcaagttcaggactcttagcatgcttctgtggatgaacaccatcg
acatcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTCTTTGAATATCACTGCAGCAGCATCCAAAAGAAACTCTCTGGCAAGTTCAGGACTCTT
AGCATGCTTCTGTGGATGAACACCATCGACATCAGTATCATTTCCATCCCTGTCCATAGCATCA
TCTTCCTGCTCATGTATAACAAATTAGACTATATGAATTGGCAGACCATCAACATGGACTAACA
AATGTTCTGATCATTCTAATCTTATTACTTAAGAAATGAGCTTACATCCTCTTCCTCAGCTTCT
TCAGCATGCTCAAAGAAACTTTGAATGCTTTCTCCCTTAGTAATTGTCACAAACCCATCCCCCA
CGATCAGCCTGCGGTGAACACATGATTGGCCCTTCAAGGCATGGGCCTTCACATAGAAATCTGT
GTTCTTGTTATCCGCATAATGCGCTCTCAGAGTAACAAAATAATCTTCAAACTGGTCAAGATCA
AGGCCCTTCCTGTGCACTTGCCCATTCATCCCCACAGCTTCAAATCCTAGTATATCAGATTTCC
CTTTTTCTGTTCCAACAGCAAACTCAAAACGATTATAGGACTTATCTTGATCCAAGAAAGATTG
GCGGCAATCAACTAAGACAGCATCCTCAAACACCTGAAAATATAAAATGCCAGATGTTAACCAC
CTATAGGCAAACTCCATGTCATCTACTGTGCAATTAAAAATGGGAATGCAACTCCTTTTAGTCT
TATTTTCCATAGTTTTACCCTTATAAGGTTTTGCTAGCTGAGTGTATTCGAAGAAGAGAAAGCA
GAAACAAGGAAAGAACAATTGTGAGAGTGCATATAGAAAGGAGCACCATCCTTACCTCACACCG
GAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGACGCTTTAAT
TCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATCTTTTGCTGT
CGAACCTGTCCAGATATTCATCCACAGAGTTAGCTAAATATTACACACCAAACCAGCCTGTGAA
GAGCATAAAAGTCTATTAAGCATTCTTCCAATCACAAGTCGTAACTATCCCACATATACTAAGG
GTGGTTGGAGGGATATCCTTGGATAGGAGTTGGCGATCCAACTTTTGAGTGTGTTTGGTTGGTG
CCTTGGTGGGCAAGGGTGGATGGGGTGGTCAGGAGAGGGAATATTCCACGAAGATGTTGGATGA
GCTCATTTGGCCCACCTTTGCTAATCTCAATTCATTACTACCTCCGTCCCATTTTAAGTGCAGT
TGTGGGTTTCTGTGTCCAACGTTTGACCGTCCGTCTTATTTGATAAGTTTATGAAAAAATAAAA
AAAAATAGTCACACATAAAGTATTATTCATGTTTTATCATCTAATAACAATAAAAATAGTAATC
GTAAAAGTTTTTCAAATAAGACGGACGGTTAAACGTTGGACATAAACAATGCAAAACTGCAGTC
TTTCTGGGACGGAGGTAGTAGTAATTTATTAGCAATAATTAATAACTTTTGTTGTTAATTACTC
CCTCATTCCCACATTGATCATCATATAATGAAATTCAAAATTTCTCAAATTGATCATCATATAA
CTGCATGGACATGGATTTCATCGAAATAGAATTAATGCAGCATGGGAGAATGTGTGAATGCTAG
GGTGTAATTGGCATGGTGTTTTAATCGATGCATGCATTGTGGGAGAATGTGTGCATGGTATCTT
GATTGATGCGATTTAAATTATTCTTGGTCTTGAGGTTTAGTGCTTTACTCCCTCCATTCCATAA
TATAAGGCACAACTACTTTTTTAGATGTTTCATAATATAAGGCGTGCATGCATGCATGCAATTA
GTAACTCCTCTCCACTAAATTATTATTTTTTAAATCCTCCACCTTCGAGATCTCTAATTCTATT
GGGTGCATTATATTTATTAGGGTGATCCAAACTAGGAGGTGATAATAATTGTTTCTTGATCTTT
GGGTTAAGGATGGTTGTGCCTTATATTTTGGAAGGGAGGGAGTATATACAATTAATCTATTTTG
TTGTTAATTAGTATAGAATATGCTAAGATTAATGATAATTAATATACTTTCTTATTAATTAATA
GTTTATTGTTATCAATCCATCCATCCTCATCCATCTAACCATACAAGAAACTGGATGGCCATAT
CCACGCAACAAAACAAAAAGTTGGATCACCATATCCCTGAAAATATGGATGGCCATATCCTATC
CAACATTGGCCATGAACCAAGCATACTCTAAGTGAAGTGCAGTCACTCGGAACATAGCAGACCA
AAAGTTTCCCACAAAGTCCGGATATAAAAAACATATTATTGCAACTATACTACTACCTCCGTTT
TTTAATAGATGACGCCGTTAACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAACTTT
TGTGAAATATGTAAAGCTATATGTATACATAAAAGTATATTTAACAATGAATCAAATGGTAGGA
AAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTAAAGAAGTC
AACGGCGTCATCTATTAAAAAACGGAGGGAGTATGTAGTTATCCTCATAATCCGATTTAGAAAC
TGCTGGTAAGCAGTACCTATTTGAATAGGAAAAAAAACAAATATCCTTTTTGAATCACAGAGAA
ACATCGACTTCTACCAAAGTACACAAAATTGCACACCAAGGTACCATAGCACTTACATGAACCA
TACAAATCTAACCATTTGTAAATAAAGCTTTCGATTTTCCTAGTGCAATGATGCATTATTGCTT
TATAAGTAACGAGAACTAATAAAAAACGACTAATAGTACTCCCCCAAACATTAAAAACTCAAAA
GACGCCCTCATCAGATCAAGGAGCAAATAGATAAAGCGATGTAACAAAAAACCTCCCTTCAATC
ACAAATGTAGGGGGAAATTTTGTCTTGGACATGTACAAAGGAGGTTTTGGATAGGACTAAATTA
CCATAATATATTAGCTCTAAGCACAACATTCAATGGAAGCATGCAAGGAGGCTGGAATGTTAGA
TATGGCCTGCATTTGTGAACAACGCCATTGGAAAAATGCGCCATGCACCCACACAATTATGGAT
GGAGGCATTAGTACACAAAATCATCCCAATTGATGATAGCATACTTGTGTTGACAGTAGTTGAT
TCCTTACTGGGGAAAGCAAATAAAGTTTTTGGGCTATTATACTCTTACTCCAGCTAGATAGATT
TGTTCACATGCTTAACTGTGCATCAATTTCATGATCTTTAATCTTGTATCAAACAAACTGTACT
TGGTTGCACTCACCTATGCATAAGTCTTTCAATGAAATCTTCTTCCTTCATCCGCAGAAGAGAT
GATCTAGTTTCTTCACACAGGTCAAACCAGTAACCCACCAGAGCATCACAAGAAAGGCGTGCAG
TGTGCAAAGCACATGTGTCTCGTGTTCCATGCCCCCTGCCATAATTAGCTATTACTGGGCTAAT
CCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTCCCGTTCACGCTCCCTCGCC
CGTGCATTGTCAAATATCTATTAAAAGAGTCAAATTAATTCGGAGAAAATTAGAATGGTTAAAT
TAGTGCACCCTAACCCAGCATCATGCAAATATTCTTTTAAATGAACAGGCATGGTCTAGAGAAA
ACTTCAGTAGTGTTCTCAATAAATTGCTAACCCAACAAGAACAAGTAGAAAAATAGAAAAGTAT
AAAACCATAAGGTGTTATTCAGGCTTACATTCTGGAGTACATGAAGGGAATTTGTATTTATGAA
GCAGTCAAGAAGAGTCAGGAGGCCATCCTTTGTTGTCGAAAGGCCTCCCCAAGAATCATCTTGT
ACAACACCTGGACCTTTTTGTTGCAGTAACTTCCCATGCATGACCATTTGTGTGAAACTTTCTA
AAAGCAGCCCATTGCACCTTGAACAGTACAAATTCCTGCGTGCATGCTCAATGAGAGTCTGCTT
ATCGATCCTGAGGAGCTCATGCCGTGCTTGAGGCGACAAGGCACTCCAGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021