Detail information of BGIOSGA032403_circ_g.4


General Information
CircRNA Name BGIOSGA032403_circ_g.4
ID in PlantcircBase osi_circ_002720
Alias 10:262326|262933
Organism Oryza sativa ssp. indica
Position chr10: 262326-262933  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032403
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032403_circ_g.2 BGIOSGA032403_circ_g.3 BGIOSGA032403_circ_g.5 BGIOSGA032403_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA032403-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCTTTTTCTGTTCCAACAGCAAACTCAAAACGATTATAGGACTTATCTTGATCCAAGAAAGA
TTGGCGGCAATCAACTAAGACAGCATCCTCAAACACctgttctttgaatatcactgcagcagca
tccaaaagaaactctctggcaagttcaggactcttagcatgcttctgtggatgaacaccatcga
catcagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCTTTGAATATCACTGCAGCAGCATCCAAAAGAAACTCTCTGGCAAGTTCAGGACTCTTA
GCATGCTTCTGTGGATGAACACCATCGACATCAGTATCATTTCCATCCCTGTCCATAGCATCAT
CTTCCTGCTCATGTATAACAAATTAGACTATATGAATTGGCAGACCATCAACATGGACTAACAA
ATGTTCTGATCATTCTAATCTTATTACTTAAGAAATGAGCTTACATCCTCTTCCTCAGCTTCTT
CAGCATGCTCAAAGAAACTTTGAATGCTTTCTCCCTTAGTAATTGTCACAAACCCATCCCCCAC
GATCAGCCTGCGGTGAACACATGATTGGCCCTTCAAGGCATGGGCCTTCACATAGAAATCTGTG
TTCTTGTTATCCGCATAATGCGCTCTCAGAGTAACAAAATAATCTTCAAACTGGTCAAGATCAA
GGCCCTTCCTGTGCACTTGCCCATTCATCCCCACAGCTTCAAATCCTAGTATATCAGATTTCCC
TTTTTCTGTTCCAACAGCAAACTCAAAACGATTATAGGACTTATCTTGATCCAAGAAAGATTGG
CGGCAATCAACTAAGACAGCATCCTCAAACAC
Conservation Information
Conserved circRNAs osa_circ_006100*
PMCS
Functional Information
Coding potential Y
Potential coding position 262803-262328(-)
Potential amino acid sequence MNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHALKGQSCVHRRLIVGDGFVTITKGE
SIQSFFEHAEEAEEEDEDDAMDRDGNDTDVDGVHPQKHAKSPELAREFLLDAAAVIFKEQVFED
AVLVDCRQSFLDQDKSYNRFEFAVGTEKGKSDILGFEAVGMNGQVHRKGLDLDQFEDYFVTLRA
HYADNKNTDFYVKAHALKGQSCVHRRLIVGDGFVTITKGESIQSFFEHAEEAEEEDEDDAMDRD
GNDTDVDGVHPQKHAKSPELAREFLLDAAAVIFKEQVFEDAVLVDCRQSFLDQDKSYNRFEFAV
GTEKGKSDILGFEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHALKGQSCVH
RRLIVGDGFVTITKGESIQSFFEHAEEAEEEDEDDAMDRDGNDTDVDGVHPQKHAKSPELAREF
LLDAAAVIFKEQVFEDAVLVDCRQSFLDQDKSYNRFEFAVGTEKGKSDILGFEAVGMNGQVHRK
GLDLDQFEDYFVTLRAHYADNKNTDFYVKAHALKGQSCVHRRLIVGDGFVTITKGESIQSFFEH
AEEAEEEDEDDAMDRDGNDTDVDGVHPQKHAKSPELAREFLLDAAAVIFKEQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021