Detail information of Os03g0227700_circ_g.6


General Information
CircRNA Name Os03g0227700_circ_g.6
ID in PlantcircBase osa_circ_018643
Alias Os_ciR9128
Organism Oryza sativa
Position chr3: 6741601-6741852  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0227700
Parent gene annotation Cytochrome P450 family protein. (Os03t0227700-01)
Parent gene strand +
Alternative splicing Os03g0227700_circ_g.3 Os03g0227700_circ_g.4 Os03g0227700_circ_g.5 Os03g0227700_circ_g.7 Os03g0227700_circ_g.8 Os03g0227700_circ_g.9 Os03g0227700_circ_g.10 Os03g0227700_circ_g.11
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATGGCGCTCGCCCTCGCCATCTTCTTC
CTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGGtcgcgtgctgccattctcggagtaatag
agaggaaaatggaagagcgggttgagaagctgagcaaggaggatgcaagcgtagagcaagacga
tcttctcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGCGTGCTGCCATTCTCGGAGTAATAGAGAGGAAAATGGAAGAGCGGGTTGAGAAGCTGAGCA
AGGAGGATGCAAGCGTAGAGCAAGACGATCTTCTCGGATGGGCTCTGAAACAATCTAACCTTTC
AAAAGAGCAAATCCTGGACCTCTTGCTGAGCTTGCTCTTCGCCGGGCACGAGACGTCGTCCATG
GCGCTCGCCCTCGCCATCTTCTTCCTTGAAGGCTGCCCCAAGGCTGTCCAAGAACTGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.314157639
Functional Information
Coding potential Y
Potential coding position 6741638-6741849(+)
6741811-6741603(-)
Potential amino acid sequence MEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGC
PKAVQELRSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLF
AGHETSSMALALAIFFLEGCPKAVQELRSRAAILGVIERKMEERVEKLSKEDASVEQDDLLGWA
LKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELRSRAAILGVIERKMEER
VEKLSKEDASVEQDDLLGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAV
QELR(+)
MARASAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITP
RMAARDLSSWTALGQPSRKKMARASAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCST
LASSLLSFSTRSSIFLSITPRMAARDLSSWTALGQPSRKKMARASAMDDVSCPAKSKLSKRSRI
CSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITPRMAARDLSSWTALGQPSRKKMARA
SAMDDVSCPAKSKLSKRSRICSFERLDCFRAHPRRSSCSTLASSLLSFSTRSSIFLSITPRMAA
R(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017