Detail information of Os04g0599900_circ_g.3


General Information
CircRNA Name Os04g0599900_circ_g.3
ID in PlantcircBase osa_circ_025057
Alias NA
Organism Oryza sativa
Position chr4: 30274179-30274866  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0599900
Parent gene annotation Similar to ENTH1 protein (Fragment). (Os04t0599900-01);Similar t
o ENTH1 protein (Fragment). (Os04t0599900-02);Similar to B0403H1
0-OSIGBa0105A11.1 protein. (Os04t0599900-03)
Parent gene strand +
Alternative splicing Os04g0599900_circ_g.1 Os04g0599900_circ_g.2 Os04g0599900_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0599900-01:2
Os04t0599900-02:2
Os04t0599900-03:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATA
CCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAGgaatgaggattcaccgagctccttgaag
tctaatgcaaaaggcaatgaggacgattttgatgattttgatcctcgtggatcttcttcaaatg
gtaaagta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 283
Transcript exons: 30274179-30274270,30274676-30274866
GAATGAGGATTCACCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGAT
TTTGATCCTCGTGGATCTTCTTCAAATGGTGCAGCTAATACAAACACCAGTGGCGTGGATCTTT
TTGCCCCAAACTTATTGGATGATTTCATCGATGTGCCTGCAGCAGCAACTCATGAAACAAACGA
CTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATACCAAGTACA
GAAACAGCTGCGGGTTCAGATGTCCAG

Genomic sequence GAATGAGGATTCACCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGAT
TTTGATCCTCGTGGATCTTCTTCAAATGGTAAAGTATTTTATTATGCTATTTCTTTGCCAGGAT
ATTTGTTTTTAACTGTACTACTGAATGCATGTTCCAGTCTTGGCATGAAAATATTTCAAAACTG
TCACTTTTTCAAGCATTTCACCCCCTCAATTCTGCATTTACATCTTGCAAATGTTGCGCTTATA
TTATTATCTTCTGCCCAACTATAATTGGAAGGTCACCAGGTGAATGACCTCTTGCTGGAAATAT
CAAACAAATATATCCTGATTATTATAACTATTTGGCTGAAGTGAACAAGTATGCAGGTTTTTTT
TTTCCTTTTATCGTGAAAAGTAGTCAGTGTTATATGATACATTTTCCAAACATGAAGATAATAC
AATTGTAGATGTAGTTGTGATCCTTAATTCTTTCAATCTCTATCTACAGGTGCAGCTAATACAA
ACACCAGTGGCGTGGATCTTTTTGCCCCAAACTTATTGGATGATTTCATCGATGTGCCTGCAGC
AGCAACTCATGAAACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTC
CAATCAGCAATACCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAG
Conservation Information
Conserved circRNAs osi_circ_014737
PMCS 0.166624988
Functional Information
Coding potential Y
Potential coding position 30274212-30274181(+)
30274741-30274857(-)
Potential amino acid sequence MQKAMRTILMILILVDLLQMVQLIQTPVAWIFLPQTYWMISSMCLQQQLMKQTTLQTLRLICLL
MQISNQQYQVQKQLRVQMSRNEDSPSSLKSNAKGNEDDFDDFDPRGSSSNGAANTNTSGVDLFA
PNLLDDFIDVPAAATHETNDSADAQVDLFADADFQSAIPSTETAAGSDVQE*(+)
MKSSNKFGAKRSTPLVFVLAAPFEEDPRGSKSSKSSSLPFALDFKELGESSFLDI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017