Detail information of Os04g0599900_circ_g.2


General Information
CircRNA Name Os04g0599900_circ_g.2
ID in PlantcircBase osa_circ_025056
Alias Os_ciR1216
Organism Oryza sativa
Position chr4: 30273717-30273825  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0599900
Parent gene annotation Similar to ENTH1 protein (Fragment). (Os04t0599900-01);Similar t
o ENTH1 protein (Fragment). (Os04t0599900-02);Similar to B0403H1
0-OSIGBa0105A11.1 protein. (Os04t0599900-03)
Parent gene strand +
Alternative splicing Os04g0599900_circ_g.1 Os04g0599900_circ_g.3 Os04g0599900_circ_g.4
Support reads 21
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0599900-01:1
Os04t0599900-02:1
Os04t0599900-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATACTGGCAGCCAGAAATCTGGCAGCAGGATAAAAAAGGATGTGAATAGAAGgtgattcata
cggtgacagttatagggataaagaacctgttaaatcctctccaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 109
Transcript exons: 30273717-30273825
GTGATTCATACGGTGACAGTTATAGGGATAAAGAACCTGTTAAATCCTCTCCAAGTTATACTGG
CAGCCAGAAATCTGGCAGCAGGATAAAAAAGGATGTGAATAGAAG

Genomic sequence GTGATTCATACGGTGACAGTTATAGGGATAAAGAACCTGTTAAATCCTCTCCAAGTTATACTGG
CAGCCAGAAATCTGGCAGCAGGATAAAAAAGGATGTGAATAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.306666667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015