Detail information of Os04g0599900_circ_g.1


General Information
CircRNA Name Os04g0599900_circ_g.1
ID in PlantcircBase osa_circ_025055
Alias Os_ciR9534
Organism Oryza sativa
Position chr4: 30273168-30274270  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0599900
Parent gene annotation Similar to ENTH1 protein (Fragment). (Os04t0599900-01);Similar t
o ENTH1 protein (Fragment). (Os04t0599900-02);Similar to B0403H1
0-OSIGBa0105A11.1 protein. (Os04t0599900-03)
Parent gene strand +
Alternative splicing Os04g0599900_circ_g.2 Os04g0599900_circ_g.3 Os04g0599900_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0599900-03:3
Os04t0599900-01:4
Os04t0599900-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACCAGGAATGAGGATTCACCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATT
TTGATGATTTTGATCCTCGTGGATCTTCTTCAAATGgctttgacaattattgagtacttaatag
ccaatggttctgagcgggcagttgatgacattcttgatcactattcaaagatctcggtatgtct
tgtttatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 541
Transcript exons: 30273168-30273251,30273355-30273500,30273607-30273825,30
274179-30274270
GCTTTGACAATTATTGAGTACTTAATAGCCAATGGTTCTGAGCGGGCAGTTGATGACATTCTTG
ATCACTATTCAAAGATCTCGGTTCTTTCAAGTTTTGAATATGTGGAACCTAATGGAAAAGATGC
TGGAATAAATGTGAGAAAGAAAGTCGAAACTATATTGGGACTCATAAATGACAAGGAGAAAATA
AAGTCTGTAAGAGAGAAAGCCGCCAGTAATCGTGACAAGTATGTTGGGCTATCATCGACAGGGA
TAACATATAAGTCAAGCTCTGCTTCATTTGGTAGCAACTATAGTTCTGGTGAACGTTATGGGAG
TTTTAGTGGTACAAGGGAAGGTGATTCATACGGTGACAGTTATAGGGATAAAGAACCTGTTAAA
TCCTCTCCAAGTTATACTGGCAGCCAGAAATCTGGCAGCAGGATAAAAAAGGATGTGAATAGAA
GGAATGAGGATTCACCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGA
TTTTGATCCTCGTGGATCTTCTTCAAATG

Genomic sequence GCTTTGACAATTATTGAGTACTTAATAGCCAATGGTTCTGAGCGGGCAGTTGATGACATTCTTG
ATCACTATTCAAAGATCTCGGTATGTCTTGTTTATGCTTTTGTTTCTGATATATAGTATTTCTT
TTCTCTTTTTTGAAGTTTATGTCATTAAAAACTTTGTTCTCTGTGCTATATTTGTCAAGGTTCT
TTCAAGTTTTGAATATGTGGAACCTAATGGAAAAGATGCTGGAATAAATGTGAGAAAGAAAGTC
GAAACTATATTGGGACTCATAAATGACAAGGAGAAAATAAAGTCTGTAAGAGAGAAAGCCGCCA
GTAATCGTGACAAGTGAGTTCTTAAGGAAAAGAATAAGTTGTGTTATACTATCTTTTTTCTGGC
TGTTTATTCATCCTGTACAACTCCAATTATTAACATATGTTTGTTGTGGATGAAGGTATGTTGG
GCTATCATCGACAGGGATAACATATAAGTCAAGCTCTGCTTCATTTGGTAGCAACTATAGTTCT
GGTGAACGTTATGGGAGTTTTAGTGGTACAAGGGAAGGTGATTCATACGGTGACAGTTATAGGG
ATAAAGAACCTGTTAAATCCTCTCCAAGTTATACTGGCAGCCAGAAATCTGGCAGCAGGATAAA
AAAGGATGTGAATAGAAGGTGCTTCAAGATTCCTTTACATTTTCCATACATATAATAGCAGCTG
CTGATATTTATAGTTTAGCCTCTCATTAAAAAATTAAATTGGCTAACCAGTACGATGGTTGTAT
GGTAGCTGGTAAATATGTTGGTGGGTGGTATAATAGCTGCATCACTTTTATCCCAAATGTGGAA
ATAAAATAAGGTTTTGTGGTACTACAATATTACAATTTATGTAGTAGTGCTGAACTGTGAGCCC
TTTTGGAGGATGATAAATGAACAGTAACATTCCTGGACTCCTAGCATCAGGCTTACTTTGTATT
ACTCTTCCTATTCTCCATCCCACCTGAGGTTGTATCTGTTTGAATTACCAGGAATGAGGATTCA
CCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGATTTTGATCCTCGTG
GATCTTCTTCAAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.367251454
Functional Information
Coding potential Y
Potential coding position 30274212-30273181(+)
30273228-30274266(-)
Potential amino acid sequence MQKAMRTILMILILVDLLQMALTIIEYLIANGSERAVDDILDHYSKISVLSSFEYVEPNGKDAG
INVRKKVETILGLINDKEKIKSVREKAASNRDKYVGLSSTGITYKSSSASFGSNYSSGERYGSF
SGTREGDSYGDSYRDKEPVKSSPSYTGSQKSGSRIKKDVNRRNEDSPSSLKSNAKGNEDDFDDF
DPRGSSSNGFDNY*(+)
MSSTARSEPLAIKYSIIVKAI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015