Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0599900_circ_g.1 |
ID in PlantcircBase | osa_circ_025055 |
Alias | Os_ciR9534 |
Organism | Oryza sativa |
Position | chr4: 30273168-30274270 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os04g0599900 |
Parent gene annotation |
Similar to ENTH1 protein (Fragment). (Os04t0599900-01);Similar t o ENTH1 protein (Fragment). (Os04t0599900-02);Similar to B0403H1 0-OSIGBa0105A11.1 protein. (Os04t0599900-03) |
Parent gene strand | + |
Alternative splicing | Os04g0599900_circ_g.2 Os04g0599900_circ_g.3 Os04g0599900_circ_g.4 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0599900-03:3 Os04t0599900-01:4 Os04t0599900-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.367251454 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30274212-30273181(+) 30273228-30274266(-) |
Potential amino acid sequence |
MQKAMRTILMILILVDLLQMALTIIEYLIANGSERAVDDILDHYSKISVLSSFEYVEPNGKDAG INVRKKVETILGLINDKEKIKSVREKAASNRDKYVGLSSTGITYKSSSASFGSNYSSGERYGSF SGTREGDSYGDSYRDKEPVKSSPSYTGSQKSGSRIKKDVNRRNEDSPSSLKSNAKGNEDDFDDF DPRGSSSNGFDNY*(+) MSSTARSEPLAIKYSIIVKAI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |