Detail information of Os04g0599900_circ_g.4


General Information
CircRNA Name Os04g0599900_circ_g.4
ID in PlantcircBase osa_circ_025058
Alias NA
Organism Oryza sativa
Position chr4: 30274676-30274866  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0599900
Parent gene annotation Similar to ENTH1 protein (Fragment). (Os04t0599900-01);Similar t
o ENTH1 protein (Fragment). (Os04t0599900-02);Similar to B0403H1
0-OSIGBa0105A11.1 protein. (Os04t0599900-03)
Parent gene strand +
Alternative splicing Os04g0599900_circ_g.1 Os04g0599900_circ_g.2 Os04g0599900_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0599900-03:1
Os04t0599900-01:1
Os04t0599900-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATACCAAG
TACAGAAACAGCTGCGGGTTCAGATGTCCAGgtgcagctaatacaaacaccagtggcgtggatc
tttttgccccaaacttattggatgatttcatcgatgtgcctgcagcagcaactcatgaaacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCAGCTAATACAAACACCAGTGGCGTGGATCTTTTTGCCCCAAACTTATTGGATGATTTCAT
CGATGTGCCTGCAGCAGCAACTCATGAAACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTT
GCTGATGCAGATTTCCAATCAGCAATACCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.401148953
Functional Information
Coding potential Y
Potential coding position 30274731-30274682(+)
30274741-30274738(-)
Potential amino acid sequence MISSMCLQQQLMKQTTLQTLRLICLLMQISNQQYQVQKQLRVQMSRCS*(+)
MKSSNKFGAKRSTPLVFVLAAPGHLNPQLFLYLVLLIGNLHQQTDQPERLQSRLFHELLLQAHR
*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017