Detail information of AT2G06990_circ_g.6


General Information
CircRNA Name AT2G06990_circ_g.6
ID in PlantcircBase ath_circ_012990
Alias 2:2898961-2900877
Organism Arabidpsis thaliana
Position chr2: 2898961-2900877  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.1 AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.5 AT2G06990_circ_g.7 AT2G06990_circ_g.8
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT2G06990.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATTGGTGATTTCCTTCAGCTTCGAGCTGCAGCAGAGGCAGTTGGTGAAAGCAGTTTAGAGA
GCAAGTTTGCAGCTGCTAGCGAGAGCTTGCGACGAGgatatgaatattcaagacacagagatag
tggatctggtcagccaaatcgaagaagttgagcagaagttacttgctcatccgatgcacaaggt
cgtgctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATGAATATTCAAGACACAGAGATAGTGGATCTGGTCAGCCAAATCGAAGAAGTTGAGCAGA
AGTTACTTGCTCATCCGATGCACAAGGTCGTGCTAAATGTAGTATTTCTTTGAGCTTCTGAACT
TAAAGAAAAGAAGACAAAATATTGTGAAAGCATATTAAGAACTTAAACAATATATTAATATTTC
TATTGTCTCATTTTTTATGTGTTGCAGTCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGA
AAGCGGAGGTGAATTATGAAATTCAACAGCTAAAATCGAAAATGCGTGATTCCCAGGTATATTA
CTTACTCTCTCACCCATGAGTAAATGATGCATGGAATCCTTTATTATGTGTGTCCTATCTGCAA
GGAATATCTCCTTTCCAGTAGGGTTGTTACTTGGCATGATAAATTCTGCTTGTATCCAATTTGT
ACTGCTTTCGATTTTCCTATACTTTTTTCCCGTTTAGCTACGTATAGACTAAAACAATATAATA
GGGAGACGAACTTTTACGTTTAAAAGCAAACAAATTGTAGAATGTTCATTGATTACTAGACTCA
CTGCTAGAGTTTAAGATTTCTTTTCATCCCTCTTGTGTCTTACAGCATATTTTTTTTTTTTATC
TCTGCAGCTCCAAAAGTTTCGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGA
CACATTGATGCTGATGGTGTCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGG
ATGAATTGCTTGTCACTGAACTGATGTTTAATGGTATGACAACTGCTTTAGCTACACAGTTCTA
AGTGTAGGCCTTTTAGGTGACTGAGGCAGTGTATAATGGTTGTATCACACTATATATAATTGCG
TTGTGTGTTCCTTACCTACCAGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTG
CAAGCTGTTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAA
ACCATTGCAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGGTAATTTAATTTCCCAGCTGA
AAGCTTGTTTATTTATCTGTGCGAGCTATTACTTTTTGGATTCCTCATTGTTTTGTGATGCCAG
ATACAACATGAATGCAAACTGGAAATTGACGTGGAAGAGTATGTGGAATCCACCATCAGGCCTT
TCCTGATGGATGTTATCTACTCTTGGTCAAAGGTTGGTATTACTTAAATCTCAGAAATACTGAT
TTTTTTTAACAGACATGAGAGTACTTTCTGTGGATAAACATGTGTTAATAATTACCCTATTTTC
TCAGTAGAATCAAGGGATTATTCGATAGAATACCCAACTCTCCTGAACCACCTTTACCCACTAG
TCCAAGTTTGTAGATGCACTCTTTATTGTAATCTCTTACTCTAGCTAACTTGACTACTATATGT
CATGGAGATAGTAAGCCTCTGAGAGTCTGAGGTCTCTTTATGTCTTATAAGCTTAAAAAATGAA
AACCTGAGTAATAACTTCGTACATGTTAGGAACAACTTCTGTATTATGCACAGTGAATGTCAAT
TTGTTCATTCTTGGATCTTGAGCTCAACAGAAATTTGATATTCTTGATTATTTCTCTTTGAAAG
GGCGCAAGCTTTGCAGAGATTATACAAATGACTGACATATTCGAAGGTAGTATCATCAGAAGTG
CTAGAAGACTCGACGAGTTTTTGAACCAGGTAATGTCACCAAACTCTGCAATTACCTTTCTCTA
AACCTCTAAGAAATCCGATGACACTTTGATTGGTGATTTCCTTCAGCTTCGAGCTGCAGCAGAG
GCAGTTGGTGAAAGCAGTTTAGAGAGCAAGTTTGCAGCTGCTAGCGAGAGCTTGCGACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.138991371
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020