Detail information of Zm00001d053308_circ_g.1


General Information
CircRNA Name Zm00001d053308_circ_g.1
ID in PlantcircBase zma_circ_001819
Alias circ834
Organism Zea mays
Position chr4: 225415252-225418792  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d053308
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Zm00001d053308_circ_g.2 Zm00001d053308_circ_g.3 Zm00001d053308_circ_g.4 Zm00001d053308_circ_g.5 Zm00001d053308_circ_g.6
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d053308_T006:8
Zm00001d053308_T004:7
Zm00001d053308_T002:8
Zm00001d053308_T008:8
Zm00001d053308_T007:8
Zm00001d053308_T009:8
Zm00001d053308_T001:8
Zm00001d053308_T005:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGTGATGTGGCAATTCCAGATCCCATCAGACCACCACCAATAACAGCAACTTTTCTAATTGG
CCTTGGTTTCAGTTGAACATCAGTTACACCTGGCACccaatggtacaccactcttagctcgctg
ttccaaatatgatgatggtttgaagaaggggccataaatttcagcccacttgcttagcttagaa
tgtatgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATGGTACACCACTCTTAGCTCGCTGTTCCAAATATGATGATGGTTTGAAGAAGGGGCCATA
AATTTCAGCCCACTTGCTTAGCTTAGAATGTATGTAAGGTGCTCCAACAGTGTCAGCCCAGAAG
ACAAGACCACCCCTGCATTTTTTTTGTAAGTTCAAATAAATACTCAGAATAGGCACCACACCTC
CTTAAATCCATAAACAATACAACATAGAAATACACAAATGGTAAATGGGAGGACAATGATCATT
GCATTAGAAGAGGTTTAGCTTGTATTGACACTAAGGGCTGCCAATACTTGCACGACGTAAAGAT
AGAATTCAGTTCAATATTAAGTAGAACTCTCTGCAGAACTACATACAAGTCAAGCATACAGTAG
TCTTGGACATTTCAAACAATGAGGAACCAGATCGATAATTAGACAACTATACACATGTTAGATA
CTATATGCAACACAATCATAGGATGAGAGGTTAGCCTGTATAATTATTAGAGTAGGTACATTTG
TTGTATGAGTACATTAGCAAGGTGCTAAATTTGAAGACATGCCATTTAAATTTATTTCCATAAA
TTGCAAATCACACCCATTGCGTTTTGTCTATATGATCTATTAAGTGTTCTTCCAGGAGTATCAT
CACAACCTGTGGTTTTAGTGAGATTTGGGATTCATGGATTAAAATTGTAAATTCATTCAGCAAA
CTTGTGCAAAAATGAACGTGCCAGGGATGGAAAACTGCGAGTTAAGTGGAAGAAAGTAAAAAAA
AAATCATTTTGTACAGAAGTAACTACATAAGCATTTAAATACAGTTAAAACTTCAAGTAATTCT
TACCTGTATTTAGGAAAGCCCATTCCAAGAACAGAAGCAATATCAAGATCAGAAGCTCGAATTA
CAACATTTTCATCCATAACCCTGCATGCCTCATTCACAACTGGGAAGAAAATCATCTCCAAAAT
ATCTTGATCCGTTAAAGTAACAGGCTGCAAGAAATATAATTTGGTCGAATAAGGATCTTACTCA
ACAGGAATAGAATAAAAATTCTAATAAAAATGCACAGGCCATGTATCAAGACAGGCGTGAGAAA
ACAGTACCTTTCCACCAGGCATTGTGTTTGCGTGCTTTCGGTACTCCTCGATAACATGCTTAAC
ACTAGGATCTGGCTTTGGCTTCCCACCCTTCTCATAAATGTAGTAACCTTTGCCGTTCACCTTT
CCTGAAAAACAGTAATTTGGAAATTTCACTTCTCGAGAAATATATAAAATGTGCATTCATCTAT
TAACTGGTTTGTGCCATTATATAAGAGGATCAAATTAGCCATCATATAAGAGAAGATCAAATTA
TGAAACAAGCAAATGTTAAGAAGTTTACCTTGTCGTCCATCCTTTACCATCAAATCCACAAGGT
CAGAGTCCAAATTTCTTTCTCCAAAGGCATCAGCGTAGATATCCTTTACTGCCAAGGCAACTCC
ATACCCAGCCACATCTTGGAGTCTACAGGGAAGCAAGGAAAAAATGCCAAATTTAAGAACTCAC
AAGAATCATGGAAGTAAAATTTAGAACAGTCAATCAACAATAGCCATTTAAGAATCAACGGTGC
CTCAGGTCTGCATTGCTCATTTTAACGAGTTAGCTAAGGCACAACACAGCAAACTAAAGATGTC
GCATTATTCTTTGTCCAGCGAAAGGGCCTCTAGCCTAGCGGTTAAGGACTTCCGAGTAGCACCT
CCAAATCCTGGGTTCCATTCCTATCGGGAGCGAATTTTCAGACTTGGTTAAAAAAATCCCCTCG
CTGTGCCCCATCCACTCTTAGGTTGCGATGTCCTGTGCGCCACCCTCCGGTTGGGCCGTTGCAG
AGTGGACAGTTGACGCCGGCCCGTTAGTGATGGGGGGCCAGGGTTCGGGGATTTTCTCGGCCGG
GCCATTGTTTCGGTCTCTTCTTATATGGAATACCGGGAGGGCGGTCTTTCCCTCCCCGGCCGAG
TTTTTTATTCTTTGTCCAGGTAAATGCTTGATTCCCATCTGCAAAAGGAAGATAATTTGGACCG
ATAATCTAGTACTGAATACATTCACAATGGTTCAAGTCCAAGAATAGCACTATCTAAAATGGTT
CAGAAGCCTGCCCAAGTGTTGGCAGAATGCCAGTTTATTTTCTAACATTGTGCATGTACATTGC
CATTAGTAAAAAATGTGGTACGACTTCATAAGGATAGTTTCATTAACCTTTGTATGAATTGCAC
TTCCTCCGTAATTTTGTACAATTTAATTCCTTTTCAAGATGAACAATTATAATGGTCATTTAAT
ACTACAAACAAATGTTAGGAAACAGAGCCAAATCACTTACTGAAAAGGTCCCATTGGCATGCCA
AAGGTGCTTATTACTCGATCAATTCTGAAAACATCAATACCAAGACTAACTAGAAGATGAGAAC
CCTGTGTGTAAGGAAAAAATGTAAGGTTGACTGCAAATCCTGTGCAGTTGCCGACCACAATAGG
GACTTTCTTTATTATCTTCCCAATGGTGATGAGATCAAGGATAGCTTGTGGTGATGTCTTCTCC
GTCCGAACAATTTCAAGCAAGGGCATAATATGAGCAGGGCTGAAAATAACACAATATAATAGCA
TTAGCAACCTGTGGATGTCAGAAATCCGTAGTTCAACTGGAAAAATGCAGTAAATGGTTTTTTA
TTTTAACAAATGTGTTAATCCATAAGCATACTCTACTCCAGATGTTTTTAGCTTTTGCACCGCT
AGTATTCAAGATATTTCACAAATCCAGTAATCAGAATTCACAAACCTGAAAAAGTGAGCCCCTA
TAATTCTATCTTGAGAATTTGTCTTCTTGCCAACAACATTCAAATCAATGGTGGATGTGTTTGT
TGCAAGTATGCAATGTTTTGGACAGATTTTCTCAATGTCAGCAAATATTGATTGCTTCAAAGGA
ATCTTCTCGATAACAGCCTACAAGAGAGGAATGAGTCACAACAACCTAGCAACCAAATATTCTA
TGAGCATGTACACATGAATTATGTAACTTAATAGAGTTCTCATGAGATTCATGAACACAAAATG
TAGTTCAATCACAACAGATTTAAAAAAACATATGAACACTAACCTCAATAACCATATCAACATC
CTTGAAATCTGAATAATCCAAAGCACCCTTGAGAAGGGCCATGGCCTTGTGCATCCTATCCTTT
GTTAGTGAACCTCTTTTGACCAGGCCCTCAAGATTACCTTTACAAAGATAGTTAGATTTACTAG
TAAGGTAACTTATAAATTTAACTTTAAAGACAATTCTAAAGCTCAAGCACATGGAGAAGAACAT
TTTCTCAAGAAATGCAGCAGCTGTATAAAGAGATTGACCTGCTATTGTTTTCTCTCCCCTTTGC
AGAAACTGAGGGTTTACTTCCTTGAGCACAACAGAAATGTTGCTAACAAGAAGTGATGTGGCAA
TTCCAGATCCCATCAGACCACCACCAATAACAGCAACTTTTCTAATTGGCCTTGGTTTCAGTTG
AACATCAGTTACACCTGGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.025981159
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b