Detail information of Zm00001d053308_circ_g.2


General Information
CircRNA Name Zm00001d053308_circ_g.2
ID in PlantcircBase zma_circ_001820
Alias circ2306
Organism Zea mays
Position chr4: 225416623-225418792  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d053308
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Zm00001d053308_circ_g.1 Zm00001d053308_circ_g.3 Zm00001d053308_circ_g.4 Zm00001d053308_circ_g.5 Zm00001d053308_circ_g.6
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d053308_T001:5
Zm00001d053308_T008:5
Zm00001d053308_T005:5
Zm00001d053308_T006:5
Zm00001d053308_T007:5
Zm00001d053308_T009:5
Zm00001d053308_T004:4
Zm00001d053308_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGTGATGTGGCAATTCCAGATCCCATCAGACCACCACCAATAACAGCAACTTTTCTAATTGG
CCTTGGTTTCAGTTGAACATCAGTTACACCTGGCACccttgtcgtccatcctttaccatcaaat
ccacaaggtcagagtccaaatttctttctccaaaggcatcagcgtagatatcctttactgccaa
ggcaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTCGTCCATCCTTTACCATCAAATCCACAAGGTCAGAGTCCAAATTTCTTTCTCCAAAGG
CATCAGCGTAGATATCCTTTACTGCCAAGGCAACTCCATACCCAGCCACATCTTGGAGTCTACA
GGGAAGCAAGGAAAAAATGCCAAATTTAAGAACTCACAAGAATCATGGAAGTAAAATTTAGAAC
AGTCAATCAACAATAGCCATTTAAGAATCAACGGTGCCTCAGGTCTGCATTGCTCATTTTAACG
AGTTAGCTAAGGCACAACACAGCAAACTAAAGATGTCGCATTATTCTTTGTCCAGCGAAAGGGC
CTCTAGCCTAGCGGTTAAGGACTTCCGAGTAGCACCTCCAAATCCTGGGTTCCATTCCTATCGG
GAGCGAATTTTCAGACTTGGTTAAAAAAATCCCCTCGCTGTGCCCCATCCACTCTTAGGTTGCG
ATGTCCTGTGCGCCACCCTCCGGTTGGGCCGTTGCAGAGTGGACAGTTGACGCCGGCCCGTTAG
TGATGGGGGGCCAGGGTTCGGGGATTTTCTCGGCCGGGCCATTGTTTCGGTCTCTTCTTATATG
GAATACCGGGAGGGCGGTCTTTCCCTCCCCGGCCGAGTTTTTTATTCTTTGTCCAGGTAAATGC
TTGATTCCCATCTGCAAAAGGAAGATAATTTGGACCGATAATCTAGTACTGAATACATTCACAA
TGGTTCAAGTCCAAGAATAGCACTATCTAAAATGGTTCAGAAGCCTGCCCAAGTGTTGGCAGAA
TGCCAGTTTATTTTCTAACATTGTGCATGTACATTGCCATTAGTAAAAAATGTGGTACGACTTC
ATAAGGATAGTTTCATTAACCTTTGTATGAATTGCACTTCCTCCGTAATTTTGTACAATTTAAT
TCCTTTTCAAGATGAACAATTATAATGGTCATTTAATACTACAAACAAATGTTAGGAAACAGAG
CCAAATCACTTACTGAAAAGGTCCCATTGGCATGCCAAAGGTGCTTATTACTCGATCAATTCTG
AAAACATCAATACCAAGACTAACTAGAAGATGAGAACCCTGTGTGTAAGGAAAAAATGTAAGGT
TGACTGCAAATCCTGTGCAGTTGCCGACCACAATAGGGACTTTCTTTATTATCTTCCCAATGGT
GATGAGATCAAGGATAGCTTGTGGTGATGTCTTCTCCGTCCGAACAATTTCAAGCAAGGGCATA
ATATGAGCAGGGCTGAAAATAACACAATATAATAGCATTAGCAACCTGTGGATGTCAGAAATCC
GTAGTTCAACTGGAAAAATGCAGTAAATGGTTTTTTATTTTAACAAATGTGTTAATCCATAAGC
ATACTCTACTCCAGATGTTTTTAGCTTTTGCACCGCTAGTATTCAAGATATTTCACAAATCCAG
TAATCAGAATTCACAAACCTGAAAAAGTGAGCCCCTATAATTCTATCTTGAGAATTTGTCTTCT
TGCCAACAACATTCAAATCAATGGTGGATGTGTTTGTTGCAAGTATGCAATGTTTTGGACAGAT
TTTCTCAATGTCAGCAAATATTGATTGCTTCAAAGGAATCTTCTCGATAACAGCCTACAAGAGA
GGAATGAGTCACAACAACCTAGCAACCAAATATTCTATGAGCATGTACACATGAATTATGTAAC
TTAATAGAGTTCTCATGAGATTCATGAACACAAAATGTAGTTCAATCACAACAGATTTAAAAAA
ACATATGAACACTAACCTCAATAACCATATCAACATCCTTGAAATCTGAATAATCCAAAGCACC
CTTGAGAAGGGCCATGGCCTTGTGCATCCTATCCTTTGTTAGTGAACCTCTTTTGACCAGGCCC
TCAAGATTACCTTTACAAAGATAGTTAGATTTACTAGTAAGGTAACTTATAAATTTAACTTTAA
AGACAATTCTAAAGCTCAAGCACATGGAGAAGAACATTTTCTCAAGAAATGCAGCAGCTGTATA
AAGAGATTGACCTGCTATTGTTTTCTCTCCCCTTTGCAGAAACTGAGGGTTTACTTCCTTGAGC
ACAACAGAAATGTTGCTAACAAGAAGTGATGTGGCAATTCCAGATCCCATCAGACCACCACCAA
TAACAGCAACTTTTCTAATTGGCCTTGGTTTCAGTTGAACATCAGTTACACCTGGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.013686674
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b