Detail information of Zm00001d053308_circ_g.3


General Information
CircRNA Name Zm00001d053308_circ_g.3
ID in PlantcircBase zma_circ_001821
Alias circ2307
Organism Zea mays
Position chr4: 225418048-225418792  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d053308
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Zm00001d053308_circ_g.1 Zm00001d053308_circ_g.2 Zm00001d053308_circ_g.4 Zm00001d053308_circ_g.5 Zm00001d053308_circ_g.6
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d053308_T006:3
Zm00001d053308_T001:3
Zm00001d053308_T008:3
Zm00001d053308_T002:3
Zm00001d053308_T005:3
Zm00001d053308_T009:3
Zm00001d053308_T004:3
Zm00001d053308_T007:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGTGATGTGGCAATTCCAGATCCCATCAGACCACCACCAATAACAGCAACTTTTCTAATTGG
CCTTGGTTTCAGTTGAACATCAGTTACACCTGGCACcctgaaaaagtgagcccctataattcta
tcttgagaatttgtcttcttgccaacaacattcaaatcaatggtggatgtgtttgttgcaagta
tgcaatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAAAAGTGAGCCCCTATAATTCTATCTTGAGAATTTGTCTTCTTGCCAACAACATTCAAA
TCAATGGTGGATGTGTTTGTTGCAAGTATGCAATGTTTTGGACAGATTTTCTCAATGTCAGCAA
ATATTGATTGCTTCAAAGGAATCTTCTCGATAACAGCCTACAAGAGAGGAATGAGTCACAACAA
CCTAGCAACCAAATATTCTATGAGCATGTACACATGAATTATGTAACTTAATAGAGTTCTCATG
AGATTCATGAACACAAAATGTAGTTCAATCACAACAGATTTAAAAAAACATATGAACACTAACC
TCAATAACCATATCAACATCCTTGAAATCTGAATAATCCAAAGCACCCTTGAGAAGGGCCATGG
CCTTGTGCATCCTATCCTTTGTTAGTGAACCTCTTTTGACCAGGCCCTCAAGATTACCTTTACA
AAGATAGTTAGATTTACTAGTAAGGTAACTTATAAATTTAACTTTAAAGACAATTCTAAAGCTC
AAGCACATGGAGAAGAACATTTTCTCAAGAAATGCAGCAGCTGTATAAAGAGATTGACCTGCTA
TTGTTTTCTCTCCCCTTTGCAGAAACTGAGGGTTTACTTCCTTGAGCACAACAGAAATGTTGCT
AACAAGAAGTGATGTGGCAATTCCAGATCCCATCAGACCACCACCAATAACAGCAACTTTTCTA
ATTGGCCTTGGTTTCAGTTGAACATCAGTTACACCTGGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.055297069
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b