Detail information of Os03g0231700_circ_g.4


General Information
CircRNA Name Os03g0231700_circ_g.4
ID in PlantcircBase osa_circ_018729
Alias Os_ciR3884
Organism Oryza sativa
Position chr3: 6957082-6957198  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os03g0231700
Parent gene annotation Similar to squalene monooxygenase. (Os03t0231700-01);Similar to
Squalene monooxygenase 2 (EC 1.14.99.7). (Os03t0231700-02)
Parent gene strand -
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.1 Os03g0231750_circ_ag.2 Os03g0231750_circ_ag.3 Os03g0231800_circ_g.1 Os03g0231800_circ_g.2 Os03g0231800_circ_g.3 Os03g0231800_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0231700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGGAGCTCGCCGGCAGTCTCGATCCGTGTCGCTGTGAGCTCGCCGGCCGCCTCGATttcacc
catcccgatctgcgcccccttcgggagttcgccggccgtctcgatccgtggcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCACCCATCCCGATCTGCGCCCCCTTCGGGAGTTCGCCGGCCGTCTCGATCCGTGGCGCCGGG
AGCTCGCCGGCAGTCTCGATCCGTGTCGCTGTGAGCTCGCCGGCCGCCTCGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.225899314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015