Detail information of AT2G03150_circ_g.8


General Information
CircRNA Name AT2G03150_circ_g.8
ID in PlantcircBase ath_circ_012655
Alias NA
Organism Arabidpsis thaliana
Position chr2: 955368-955976  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.1 AT2G03150_circ_g.2 AT2G03150_circ_g.3 AT2G03150_circ_g.4 AT2G03150_circ_g.5 AT2G03150_circ_g.6 AT2G03150_circ_g.7
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.2:3
AT2G03150.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGTCTGAGACTTGAAAAACCTTTTCCTTTGCAGACACTCAAAGGATAAGCTTCATCTTGAT
CTGAGTAACTGCCGTCACTGGAATCCATTCCTAGAGttttgagcatgattacattgaagatggt
ggagctgatgtgaaaagtacttccactaagcctttagctttgaaaactggaggaaaaagtgttt
ggaacgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 379
Transcript exons: 955368-955470,955617-955828,955913-955976
TTTTGAGCATGATTACATTGAAGATGGTGGAGCTGATGTGAAAAGTACTTCCACTAAGCCTTTA
GCTTTGAAAACTGGAGGAAAAAGTGTTTGGAACGCCAAGATGGTTTTGATGAGCGGGCTGAGCA
GGACTGCTCTGGAAGATCTTGCTTCAGATAAATTCTTTGAGGATCGTATACCTCATATATGCAA
CATATTAAAATTCGCTGTTCTTAAAAAAGATCATTCATTCATGGCGATTGGTGGTTCCTGGGAT
CCCACAGATGGCATGGACCCATCAGTTGATCAGTCTTCCTTAATTCAGACAATGCTGAGACACT
CAAAGGATAAGCTTCATCTTGATCTGAGTAACTGCCGTCACTGGAATCCATTCCTAGAG

Genomic sequence TTTTGAGCATGATTACATTGAAGATGGTGGAGCTGATGTGAAAAGTACTTCCACTAAGCCTTTA
GCTTTGAAAACTGGAGGAAAAAGTGTTTGGAACGCCAAGGTTGGCTGTTTTTTTCTTTCTCATT
GATAAAGATTGCCTCTTTAATTATGTCATTGCTCATGTTTGCACGATGTATCATTGCTGCTATT
GTTTCGGAGTATATTGAAAGAATTGCTCATGTGTTATGGGTTTTATGTGCTGTTCAGATGGTTT
TGATGAGCGGGCTGAGCAGGACTGCTCTGGAAGATCTTGCTTCAGATAAATTCTTTGAGGATCG
TATACCTCATATATGCAACATATTAAAATTCGCTGTTCTTAAAAAAGATCATTCATTCATGGCG
ATTGGTGGTTCCTGGGATCCCACAGATGGCATGGACCCATCAGTTGATCAGTCTTCCTTAATTC
AGACAATGCTGAGGTTTGTCTCTTCACGTATTCTTTTGTCATTCTTTGCTGCCGTTTTGTTCAT
TGTCTGAGACTTGAAAAACCTTTTCCTTTGCAGACACTCAAAGGATAAGCTTCATCTTGATCTG
AGTAACTGCCGTCACTGGAATCCATTCCTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.29258167
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017