Detail information of Os11g0461000_circ_g.1


General Information
CircRNA Name Os11g0461000_circ_g.1
ID in PlantcircBase osa_circ_009311
Alias NA
Organism Oryza sativa
Position chr11: 15713070-15713690  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0461000
Parent gene annotation Peptidase S10, serine carboxypeptidase family protein. (Os11t046
1000-01);Hypothetical conserved gene. (Os11t0461000-02);Peptidas
e S10, serine carboxypeptidase family protein. (Os11t0461000-03)
Parent gene strand +
Alternative splicing Os11g0461000_circ_igg.1 Os11g0461000_circ_igg.2 Os11g0461000_circ_igg.3 Os11g0461000_circ_g.2 Os11g0461000_circ_g.3 Os11g0461000_circ_g.4 Os11g0461000_circ_g.5 Os11g0461000_circ_g.6 Os11g0461000_circ_g.7 Os11g0461000_circ_g.8
Support reads 3
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0461000-03:3
Os11t0461000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCCCGTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACTAGCGATACC
AAGACAGTGAAACAGCTTGTTATTTTCCTCAGAAAGatacgtggaggtgaacgagagtacgggc
gtgcgtctcttctactactttgtccagtcagagaaggatcctgatgtagacccacttttattgt
ggctatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 207
Transcript exons: 15713070-15713205,15713620-15713690
ATACGTGGAGGTGAACGAGAGTACGGGCGTGCGTCTCTTCTACTACTTTGTCCAGTCAGAGAAG
GATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTGGGCCTGGCTGTTCTAGTCTCTCTG
GCCTAACCCGGCAACACAGGAAGGCTCCAAGACTAGCGATACCAAGACAGTGAAACAGCTTGTT
ATTTTCCTCAGAAAG

Transcript length: 225
Transcript exons: 15713070-15713189,15713586-15713690
ATACGTGGAGGTGAACGAGAGTACGGGCGTGCGTCTCTTCTACTACTTTGTCCAGTCAGAGAAG
GATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTGGGCCTGGCTGTTCTAGGTGGATTC
TCCCGTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACTAGCGATACCAAG
ACAGTGAAACAGCTTGTTATTTTCCTCAGAAAG

Transcript length: 349
Transcript exons: 15713070-15713215,15713366-15713445,15713568-15713690
ATACGTGGAGGTGAACGAGAGTACGGGCGTGCGTCTCTTCTACTACTTTGTCCAGTCAGAGAAG
GATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTGGGCCTGGCTGTTCTAGTCTCTCTG
GCCTAACCCACGAGATAGGACCATTCCAATTCGCCGCAAAACGGTATTACAGTGGAGGATTGCC
GAAAATTATCTATCAACCAGAGACTTGGACTAAGGTGAGCAACATAATTTTTGTGGATTCTCCC
GTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACTAGCGATACCAAGACAG
TGAAACAGCTTGTTATTTTCCTCAGAAAG

Genomic sequence ATACGTGGAGGTGAACGAGAGTACGGGCGTGCGTCTCTTCTACTACTTTGTCCAGTCAGAGAAG
GATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTGGGCCTGGCTGTTCTAGTCTCTCTG
GCCTAACCCACGAGATAGGTAAATTAACTAGCAGGTTATTTTTTTCAGATTATTGAAAAAATTC
CACCGAGTTCCTTCGGATAAACAATATGGTAAACCATGCTTATAGGTCATGTTACAATAACGTT
TGTTGTATTTAACAGATTATTCATGTGCATACATTTATAGGACCATTCCAATTCGCCGCAAAAC
GGTATTACAGTGGAGGATTGCCGAAAATTATCTATCAACCAGAGACTTGGACTAAGGTTGCTTA
CATTATTTAATGGACGTGGCAACAAAGCAAATTATTTGTATCTCTGTCTCAAATGAAAAAAAGG
CATGTGCCCATATCCAGGTTTTAATGGATGAATTTTGCATGGTTTTGCAGGTGAGCAACATAAT
TTTTGTGGATTCTCCCGTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACT
AGCGATACCAAGACAGTGAAACAGCTTGTTATTTTCCTCAGAAAG
Conservation Information
Conserved circRNAs osi_circ_008997
PMCS 0.22791197
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017